←Back to structures
VP2
Euk-VirAmerican_grass_carp_reovirus
VP2__YP_001837095__American_grass_carp_reovirus__465447
Identity
- Accession:
- YP_001837095 ↗
- Protein ID:
- VP2
- Kingdom:
- euk
Quality
89.0
mean pLDDT
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 966-1046_1125-1153
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07925.16 best | RdRP_5 | 133.6 | 7.60e-39 | 75.4% | 6.5% |
| PF07925.16 | RdRP_5 | 39.5 | 1.90e-10 | 30.0% | 2.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e91A00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.58 | 39.0 | 4.30e-01 | 81.8% | 88.2% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.56 | 42.0 | 3.86e-01 | 79.1% | 61.0% |
| 3pvuA02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.55 | 32.0 | 3.58e-01 | 74.5% | 75.0% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.51 | 36.0 | 3.97e-01 | 76.4% | 92.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1697853 | 4962.1.1.2 ↗ | alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5 | 0.92 | 85.0 | 5.59e-01 | 94.5% | 48.5% |
| 2392233 | 4962.1.1.2 ↗ | alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5 | 0.89 | 85.0 | 5.61e-01 | 100.0% | 50.4% |
| 3940361 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 26.0 | 3.09e-01 | 86.4% | 64.0% |
| 1409242 | 132.1.1.2 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › Ribosomal_L50 | 0.54 | 22.0 | 2.63e-01 | 77.3% | 54.8% |
| 3900696 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 38.0 | 3.34e-01 | 74.5% | 89.4% |
| 3164743 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 38.0 | 3.32e-01 | 74.5% | 89.1% |
| 4620518 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.50 | 34.0 | 3.42e-01 | 87.3% | 68.2% |
| 3805617 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.50 | 39.0 | 3.52e-01 | 83.6% | 72.3% |
D2
medium
residues 294-325_561-597_690-802
Domain cluster:
rep: RNA_polymerase__YP_009110697__Cangyuan_orthoreovirus__1388882__D557-588_685-792
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07925.16 best | RdRP_5 | 237.8 | 2.70e-70 | 62.6% | 8.9% |
| PF07925.16 | RdRP_5 | 63.1 | 1.40e-17 | 22.5% | 3.1% |
| PF07925.16 | RdRP_5 | 46.7 | 1.30e-12 | 18.7% | 2.6% |
D3
medium
residues 425-560_598-689
Domain cluster:
rep: RNA_polymerase__YP_009110697__Cangyuan_orthoreovirus__1388882__D380-396_454-556_644-684
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07925.16 best | RdRP_5 | 277.7 | 2.30e-82 | 60.1% | 10.7% |
| PF07925.16 | RdRP_5 | 178.8 | 1.70e-52 | 40.8% | 7.2% |
D4
medium
residues 803-881
Domain cluster:
rep: RNA_polymerase__YP_009110697__Cangyuan_orthoreovirus__1388882__D793-804_819-880
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07925.16 best | RdRP_5 | 165.2 | 2.20e-48 | 100.0% | 6.2% |
D5
medium
residues 898-965_1047-1057
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07925.16 best | RdRP_5 | 111.6 | 3.40e-32 | 97.5% | 5.4% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 41.0 | 3.89e-01 | 73.4% | 57.4% |
| 5ch5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 2.76e-01 | 97.5% | 83.6% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.50 | 38.0 | 2.94e-01 | 82.3% | 46.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2392233 | 4962.1.1.2 ↗ | alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5 | 0.97 | 93.0 | 5.72e-01 | 100.0% | 42.4% |
| 1697853 | 4962.1.1.2 ↗ | alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5 | 0.87 | 80.0 | 5.04e-01 | 100.0% | 40.3% |
| 3039404 | 4962.1.1.2 ↗ | alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5 | 0.84 | 67.0 | 7.17e-01 | 84.8% | 100.0% |
| 3742811 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.52 | 38.0 | 3.40e-01 | 97.5% | 53.9% |
D6
medium
residues 1058-1114_1176-1274
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07925.16 best | RdRP_5 | 173.9 | 5.10e-51 | 64.1% | 7.7% |
| PF07925.16 | RdRP_5 | 90.0 | 1.10e-25 | 37.8% | 4.5% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r7rA07 | 3.30.230.140 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.72 | 53.0 | 5.94e-01 | 100.0% | 99.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2392233 | 4962.1.1.2 ↗ | alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5 | 0.98 | 96.0 | 6.84e-01 | 100.0% | 57.6% |
| 1697853 | 4962.1.1.2 ↗ | alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5 | 0.95 | 93.0 | 6.70e-01 | 100.0% | 59.1% |