←Back to structures

VP2

Euk-Vir

Cosavirus_E

VP2__YP_002956078__Cosavirus_E__2003651

Identity

Accession:
YP_002956078 ↗
Protein ID:
VP2
Kingdom:
euk

Quality

80.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Cosavirus› Cosavirus_E

TaxID: 2003651

Cluster

View cluster (133 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-67_86-119_201-226_243-262
PDB
Domain cluster: rep: VP2__YP_002956109__Human_cosavirus_B__586420__D18-29_55-179_244-263
D2 medium residues 68-85_120-200_227-242
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 5.19e-01 100.0% 67.5%
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 60.0 4.34e-01 100.0% 55.9%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 59.0 4.82e-01 100.0% 72.8%
6aj3B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 58.0 5.01e-01 100.0% 88.0%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 54.0 4.25e-01 100.0% 60.4%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 53.0 3.86e-01 100.0% 56.7%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 53.0 3.98e-01 100.0% 54.9%
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 53.0 3.88e-01 100.0% 62.3%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 51.0 4.03e-01 100.0% 60.5%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 51.0 3.94e-01 100.0% 60.2%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 50.0 3.82e-01 100.0% 52.3%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 50.0 4.03e-01 100.0% 65.3%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 49.0 3.82e-01 100.0% 61.5%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 48.0 3.71e-01 100.0% 57.1%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 3.68e-01 100.0% 58.3%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 47.0 3.63e-01 100.0% 57.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2099173 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.74 71.0 5.19e-01 100.0% 68.7%
3075118 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.62 58.0 4.34e-01 100.0% 67.2%
4882965 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.60 55.0 4.94e-01 100.0% 73.5%
2726763 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.58 54.0 3.99e-01 100.0% 63.2%
1400716 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.57 54.0 4.25e-01 100.0% 60.4%
1211 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.56 53.0 3.98e-01 100.0% 54.9%
2044958 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.55 52.0 3.93e-01 100.0% 60.2%
2440135 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 48.0 3.76e-01 100.0% 66.4%