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VP2

Euk-Vir

Human_cosavirus_B

VP2__YP_002956109__Human_cosavirus_B__586420

Identity

Accession:: YP_002956109 ↗
Protein ID:: VP2
Kingdom:: euk

Quality

79.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Cosavirus› Human_cosavirus_B

TaxID: 586420

Cluster

View cluster (133 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-29_55-179_244-263

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00073.27 best	Rhv	30.5	3.90e-07	80.2%	53.2%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tme200	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.80	77.0	6.38e-01	100.0%	94.9%
2ws9201	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.71	63.0	5.82e-01	92.4%	88.2%
5j98B00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.67	64.0	5.29e-01	100.0%	89.6%
4qpiB00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.62	59.0	5.21e-01	98.7%	77.9%
4qpiC00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.61	54.0	4.56e-01	92.4%	75.6%
3napB00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.61	58.0	4.82e-01	98.7%	70.0%
6jhsA00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.56	51.0	4.25e-01	98.1%	68.8%
2ws9300	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.55	51.0	4.48e-01	98.7%	80.5%
4rs5A00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.55	47.0	4.20e-01	92.4%	81.4%
1dw9A02	3.30.1160.10	Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain	0.54	25.0	3.53e-01	78.3%	95.6%
3jciA00	2.60.120.950	Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein	0.54	47.0	4.41e-01	92.4%	95.3%
2ws9100	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	46.0	3.98e-01	92.4%	77.6%
6sk6A00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	46.0	3.83e-01	92.4%	68.5%
1cov100	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	45.0	3.80e-01	92.4%	67.7%
1mec100	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	46.0	3.84e-01	98.7%	80.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2099173	10.2.1.1 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv	0.80	77.0	6.27e-01	100.0%	95.1%
4768609	10.2.1.1 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv	0.72	69.0	5.59e-01	100.0%	93.7%
2721878	10.2.1.1 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv	0.60	57.0	4.74e-01	98.7%	77.2%
5042117	11.1.5.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f	0.56	32.0	3.54e-01	86.6%	68.8%
4950253	10.20.1.0 ↗	beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease	0.54	32.0	3.62e-01	92.4%	76.7%
1687950	10.2.1.69 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5	0.53	33.0	3.56e-01	91.1%	69.6%
141629	10.2.1.69 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5	0.53	33.0	3.53e-01	91.1%	69.8%
3449678	11.1.1.214 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N	0.52	21.0	2.80e-01	73.9%	68.0%

D2 medium residues 30-41_180-243

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00073.27 best	Rhv	38.1	1.80e-09	88.2%	32.8%