VP2

Euk-Vir

Rotavirus_F_chicken_03V0568_DEU_2003

VP2__YP_008145314__Rotavirus_F_chicken_03V0568_DEU_2003__994994

Identity

55.5 mean pLDDT

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 150-286

PDB

D2 medium residues 331-438

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05087.17 best	Rota_VP2	156.8	1.10e-45	100.0%	12.0%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4rfsS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.55	40.0	3.45e-01	78.7%	67.9%
4yonA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.54	38.0	3.11e-01	73.1%	67.1%
1j0aA01	3.40.50.1100	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.52	36.0	2.86e-01	70.4%	44.5%
2etsA00	1.20.120.440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like	0.50	36.0	3.57e-01	79.6%	70.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5021445	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.55	40.0	3.98e-01	75.9%	99.1%
3231808	601.54.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 › Far-17a_AIG1	0.50	36.0	3.22e-01	75.0%	81.2%