←Back to structures
VP2
Euk-VirPorcine_bocavirus
VP2__YP_009010977__Porcine_bocavirus__1165907
Identity
- Accession:
- YP_009010977 ↗
- Protein ID:
- VP2
- Kingdom:
- euk
Quality
70.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Bocaparvovirus›
Porcine_bocavirus
TaxID: 1165907
Cluster
View cluster (92 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-248_455-499
Domain cluster:
rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 120.0 | 1.50e-34 | 80.1% | 38.9% |
D2
medium
residues 295-350_395-420
D3
medium
residues 368-394_421-454_500-546
Domain cluster:
rep: VP1__YP_007518456__Canine_bocavirus_1__1511885__D247-270_659-712
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qc8A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.87 | 82.0 | 5.14e-01 | 100.0% | 35.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3107798 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.91 | 87.0 | 5.32e-01 | 100.0% | 36.2% |
| 2707659 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.89 | 85.0 | 5.23e-01 | 100.0% | 35.5% |