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VP2

Euk-Vir

Sea_otter_parvovirus_1

VP2__YP_009272692__Sea_otter_parvovirus_1__1882382

Identity

Accession:
YP_009272692 ↗
Protein ID:
VP2
Kingdom:
euk

Quality

56.0 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Sea_otter_parvovirus_1

TaxID: 1882382

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-57_111-163
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00740.24 best VP1_2 55.0 7.90e-15 95.6% 9.7%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 33.0 2.98e-01 70.6% 86.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3674227 11.1.5.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.52 35.0 3.02e-01 70.6% 42.6%
D2 medium residues 58-73_164-197_258-277_279-288_446-538
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00740.24 best VP1_2 41.2 1.10e-10 55.5% 13.9%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c8dA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.90 85.0 5.73e-01 98.3% 88.1%
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.85 80.0 5.49e-01 98.3% 87.8%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.83 78.0 5.42e-01 98.3% 86.9%
3rykA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 30.0 3.07e-01 90.8% 53.1%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.72e-01 96.0% 74.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4884619 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.90 86.0 5.73e-01 98.3% 86.9%
2644354 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.86 81.0 5.51e-01 98.3% 88.0%
2707659 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.84 79.0 5.40e-01 98.3% 84.0%
2990572 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.84 79.0 5.38e-01 98.8% 88.3%
3107798 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.83 78.0 5.33e-01 98.3% 87.5%
3633076 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.50 16.0 2.09e-01 76.3% 42.9%
D3 medium residues 74-110_198-257
PDB