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VP2

Euk-Vir

Dromedary_camel_bocaparvovirus_2

VP2__YP_009389291__Dromedary_camel_bocaparvovirus_2__2014604

Identity

Accession:: YP_009389291 ↗
Protein ID:: VP2
Kingdom:: euk

Quality

68.9 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Dromedary_camel_bocaparvovirus_2

TaxID: 2014604

Cluster

View cluster (92 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-131_155-250_476-487

PDB

Domain cluster: rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00740.24 best	VP1_2	33.9	1.90e-08	51.8%	16.6%
PF00740.24	VP1_2	48.0	1.00e-12	46.2%	18.3%

D2 medium residues 132-154_442-475

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1d0nA06	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.67	44.0	3.41e-01	96.5%	30.7%
2mc2A00	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.59	49.0	3.37e-01	94.7%	96.1%
5d6hA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.58	49.0	3.93e-01	100.0%	49.2%
1xovA03	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.55	33.0	3.09e-01	80.7%	45.8%
1k5dB00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.53	45.0	3.44e-01	100.0%	64.4%
3nqkA02	2.40.128.440	Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361	0.52	41.0	3.16e-01	96.5%	85.0%
5exvC00	3.40.1570.10	Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains	0.52	44.0	3.19e-01	96.5%	53.3%
5t89Y06	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	41.0	3.71e-01	98.2%	62.0%
2eixA01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.51	42.0	3.50e-01	93.0%	57.5%
2hqvA00	3.40.1570.10	Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains	0.51	43.0	3.16e-01	98.2%	52.3%
4d8mA02	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.51	40.0	3.01e-01	94.7%	50.0%
3nziA01	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.51	42.0	3.57e-01	100.0%	75.5%
2d9wA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.50	40.0	3.45e-01	100.0%	93.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2707659	10.2.1.9 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat	0.88	82.0	4.64e-01	100.0%	66.5%
2990572	10.2.1.9 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat	0.86	79.0	4.48e-01	100.0%	71.2%
3490438	11.1.1.1 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin	0.63	51.0	3.98e-01	100.0%	39.3%
5081122	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.63	52.0	4.50e-01	100.0%	93.0%
5004293	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.57	49.0	4.27e-01	100.0%	83.3%
3857972	11.1.1.179 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3	0.54	45.0	3.76e-01	98.2%	52.4%
5050023	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	43.0	3.25e-01	96.5%	59.4%
3477568	72.1.1.8 ↗	beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like › IL4_i_Ig	0.53	38.0	3.35e-01	82.5%	82.7%
4298582	11.1.5.16 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PCuAC	0.50	40.0	3.24e-01	96.5%	87.7%

D3 medium residues 251-292

PDB

D4 medium residues 336-441_513-533

PDB