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VP2
Euk-VirChipmunk_parvovirus
VP2__YP_009507378__Chipmunk_parvovirus__56820
Identity
- Accession:
- YP_009507378 ↗
- Protein ID:
- VP2
- Kingdom:
- euk
Quality
69.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Erythroparvovirus›
Chipmunk_parvovirus
TaxID: 56820
Cluster
View cluster (92 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-141_172-210_469-499
Domain cluster:
rep: capsid_protein_2__YP_004928148__Human_parvovirus_B19__10798__D22-40_52-122_172-219
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 96.9 | 1.50e-27 | 65.6% | 23.6% |
D2
medium
residues 142-171_211-225_427-468
Domain cluster:
rep: VP1__YP_009389294__Dromedary_camel_bocaparvovirus_1__2014603__D298-327_377-395_560-595
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 41.2 | 1.10e-10 | 62.1% | 8.4% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g8gA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.95 | 92.0 | 5.42e-01 | 100.0% | 62.0% |
| 1s58A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.95 | 90.0 | 5.36e-01 | 100.0% | 58.3% |
| 4qc8A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.90 | 85.0 | 5.11e-01 | 100.0% | 60.8% |
| 1c8dA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.88 | 82.0 | 4.88e-01 | 100.0% | 61.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2644354 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.95 | 92.0 | 5.42e-01 | 100.0% | 62.0% |
| 1195 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.95 | 90.0 | 5.36e-01 | 100.0% | 58.3% |
D3
medium
residues 364-426