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VP2
Euk-VirMiniopterus_schreibersii_bat_bocavirus
VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554
Identity
- Accession:
- YP_009508801 ↗
- Protein ID:
- VP2
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Bocaparvovirus›
Miniopterus_schreibersii_bat_bocavirus
TaxID: 1911554
Cluster
View cluster (92 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 51-253_470-529
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 133.9 | 9.70e-39 | 79.1% | 39.4% |
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qc8A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.94 | 92.0 | 7.13e-01 | 100.0% | 92.0% |
| 1s58A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.89 | 86.0 | 6.60e-01 | 100.0% | 91.6% |
| 2g8gA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.88 | 87.0 | 6.60e-01 | 100.0% | 92.7% |
| 1c8dA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.88 | 85.0 | 6.44e-01 | 100.0% | 93.6% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.78 | 26.0 | 3.92e-01 | 90.1% | 67.2% |
| 4yarA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.76 | 25.0 | 3.79e-01 | 89.4% | 65.9% |
| 7zvmA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.76 | 25.0 | 4.25e-01 | 90.1% | 80.4% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.76 | 25.0 | 4.50e-01 | 90.1% | 90.9% |
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.75 | 27.0 | 4.07e-01 | 89.4% | 73.0% |
| 5wxuA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.71 | 26.0 | 3.32e-01 | 90.1% | 54.3% |
| 3es4A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.69 | 24.0 | 3.65e-01 | 90.9% | 70.7% |
| 4b29A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.69 | 24.0 | 2.77e-01 | 86.7% | 41.0% |
| 2bnmA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 26.0 | 3.77e-01 | 89.4% | 74.2% |
| 5cu1A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 24.0 | 2.77e-01 | 91.3% | 44.7% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 29.0 | 4.29e-01 | 95.1% | 99.1% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 29.0 | 4.22e-01 | 95.4% | 95.9% |
| 6l9iA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 24.0 | 2.89e-01 | 90.9% | 50.6% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 25.0 | 3.54e-01 | 89.7% | 76.0% |
| 1auyB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 39.0 | 4.48e-01 | 98.9% | 85.7% |
| 4llfD01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 41.0 | 4.86e-01 | 96.6% | 98.9% |
| 1tq5A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 25.0 | 3.54e-01 | 90.9% | 79.2% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 26.0 | 3.72e-01 | 87.1% | 87.2% |
| 1b35A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 46.0 | 4.70e-01 | 99.6% | 82.3% |
| 5ewnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 41.0 | 4.77e-01 | 95.1% | 100.0% |
| 4xabA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.58 | 32.0 | 3.32e-01 | 88.6% | 54.7% |
| 3shrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 22.0 | 3.06e-01 | 86.3% | 65.0% |
| 2qcsB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 22.0 | 3.15e-01 | 86.3% | 72.8% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 43.0 | 4.35e-01 | 99.2% | 77.7% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 45.0 | 4.47e-01 | 100.0% | 79.1% |
| 1fmd100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 33.0 | 3.85e-01 | 99.6% | 80.2% |
| 5hbaA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 29.0 | 3.97e-01 | 90.5% | 99.2% |
| 6tfjA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 23.0 | 3.32e-01 | 84.8% | 83.5% |
| 1fmd200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 40.0 | 4.41e-01 | 96.6% | 91.3% |
| 2o1qA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 23.0 | 3.35e-01 | 100.0% | 83.5% |
| 1o91A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 27.0 | 3.79e-01 | 90.5% | 99.2% |
| 4f3jA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 28.0 | 3.78e-01 | 89.0% | 95.8% |
| 1tme200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 46.0 | 4.71e-01 | 100.0% | 97.3% |
| 3ghmA03 | 2.60.120.830 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 27.0 | 3.61e-01 | 90.1% | 92.3% |
| 3napC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 4.15e-01 | 99.2% | 80.4% |
| 2yc2A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 27.0 | 3.73e-01 | 86.7% | 100.0% |
| 1o9zA00 | 2.60.40.1410 | Mainly Beta › Sandwich › Immunoglobulin-like › Bacterial adhesins - F17c-type | 0.51 | 30.0 | 3.67e-01 | 88.2% | 87.6% |
| 5t89Y06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 19.0 | 3.00e-01 | 82.1% | 88.0% |
| 4mxwD00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 27.0 | 3.67e-01 | 88.2% | 100.0% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2707659 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.95 | 93.0 | 7.13e-01 | 100.0% | 90.2% |
| 3107798 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.95 | 94.0 | 7.05e-01 | 100.0% | 92.2% |
| 3107916 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.95 | 73.0 | 6.96e-01 | 92.0% | 69.0% |
| 2644354 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.89 | 87.0 | 6.60e-01 | 100.0% | 93.2% |
| 4884619 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.89 | 86.0 | 6.46e-01 | 100.0% | 93.2% |
| 2142463 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.89 | 86.0 | 6.53e-01 | 100.0% | 93.3% |
| 1195 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.89 | 86.0 | 6.60e-01 | 100.0% | 91.6% |
| 2990572 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.88 | 86.0 | 6.52e-01 | 100.0% | 93.1% |
| 4880563 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.84 | 59.0 | 7.08e-01 | 88.6% | 100.0% |
| 3063115 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.83 | 58.0 | 6.75e-01 | 76.0% | 93.9% |
| 3108999 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.79 | 65.0 | 6.80e-01 | 92.0% | 89.9% |
| 1034414 | 10.2.1.16 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 | 0.76 | 69.0 | 5.79e-01 | 94.3% | 85.4% |
| 3106452 | 10.2.1.28 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 | 0.72 | 65.0 | 5.47e-01 | 93.9% | 88.9% |
| 1112407 | 10.2.1.28 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 | 0.69 | 62.0 | 5.45e-01 | 94.3% | 90.0% |
| 2990501 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.68 | 66.0 | 5.71e-01 | 100.0% | 96.6% |
| 4980338 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.68 | 31.0 | 4.70e-01 | 87.5% | 100.0% |
| 5033161 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.66 | 34.0 | 4.78e-01 | 88.2% | 100.0% |
| 178766 | 10.2.1.53 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › IHHNV_capsid | 0.66 | 59.0 | 5.65e-01 | 93.2% | 87.3% |
| 3473996 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.66 | 60.0 | 5.91e-01 | 95.4% | 97.9% |
| 3405713 | 10.32.1.231 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_M | 0.65 | 28.0 | 4.38e-01 | 87.5% | 100.0% |
| 4942975 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.65 | 30.0 | 4.49e-01 | 87.1% | 99.1% |
| 3519988 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.65 | 28.0 | 4.22e-01 | 87.1% | 94.5% |
| 3630685 | 10.32.1.228 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SID-1_RNA_chan | 0.64 | 32.0 | 4.46e-01 | 90.1% | 95.4% |
| 4026940 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.64 | 33.0 | 4.12e-01 | 91.3% | 78.2% |
| 3820043 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.64 | 33.0 | 4.22e-01 | 90.9% | 84.7% |
| 3191060 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.61 | 30.0 | 3.70e-01 | 89.7% | 72.0% |
| 3586546 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 30.0 | 4.22e-01 | 90.5% | 95.4% |
| 4525375 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 29.0 | 4.07e-01 | 86.7% | 91.5% |
| 5041350 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 33.0 | 4.20e-01 | 87.1% | 89.0% |
| 3398159 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.59 | 29.0 | 4.01e-01 | 88.6% | 91.1% |
| 3404051 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 35.0 | 4.50e-01 | 90.5% | 100.0% |
| 2321067 | 10.12.1.13 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin | 0.58 | 26.0 | 3.41e-01 | 91.3% | 72.1% |
| 4023517 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 31.0 | 4.17e-01 | 90.9% | 100.0% |
| 3247634 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.56 | 30.0 | 4.11e-01 | 91.3% | 99.3% |
| 379700 | 10.2.1.8 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyhedrin | 0.56 | 34.0 | 3.78e-01 | 88.2% | 73.7% |
| 1868431 | 10.3.1.2 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q | 0.55 | 29.0 | 3.97e-01 | 90.5% | 99.2% |
| 5039236 | 10.1.2.191 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM60 | 0.55 | 30.0 | 3.97e-01 | 89.4% | 97.9% |
| 3805836 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 26.0 | 3.61e-01 | 87.1% | 90.4% |
| 2044958 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.53 | 40.0 | 4.14e-01 | 100.0% | 80.3% |
| 3402031 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 29.0 | 3.19e-01 | 86.7% | 61.8% |
| 4968615 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 29.0 | 3.85e-01 | 90.5% | 100.0% |
| 3646939 | 10.32.1.212 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind | 0.53 | 30.0 | 3.42e-01 | 90.5% | 73.3% |
| 3408307 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.53 | 28.0 | 3.68e-01 | 86.7% | 92.9% |
| 3306288 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 30.0 | 3.96e-01 | 90.1% | 100.0% |
| 5028929 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 30.0 | 3.94e-01 | 88.6% | 100.0% |
| 3937351 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 30.0 | 3.72e-01 | 84.4% | 89.7% |
| 3906025 | 10.32.1.189 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CAND6-7_N | 0.52 | 34.0 | 4.11e-01 | 87.5% | 100.0% |
| 3461676 | 10.32.1.212 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind | 0.51 | 31.0 | 3.50e-01 | 96.2% | 76.5% |
| 3472554 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.51 | 32.0 | 3.95e-01 | 90.1% | 98.2% |
| 3942277 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 30.0 | 3.88e-01 | 87.1% | 100.0% |
| 3992407 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 28.0 | 3.64e-01 | 92.8% | 94.0% |
D2
medium
residues 362-469_530-557