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VP2
Euk-VirCutavirus
VP2__YP_009508807__Cutavirus__1867125
Identity
- Accession:
- YP_009508807 ↗
- Protein ID:
- VP2
- Kingdom:
- euk
Quality
55.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Protoparvovirus›
Cutavirus
TaxID: 1867125
Cluster
View cluster (20 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-81_117-152_266-286_507-526
Domain cluster:
rep: capsid_protein_VP1__YP_009508791__Bat_bocavirus_WM40__2259810__D188-207_240-274_318-332_381-399_642-662
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 39.5 | 3.80e-10 | 44.4% | 7.4% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c8dA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.92 | 89.0 | 5.46e-01 | 100.0% | 90.9% |
| 5j09A00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.67 | 55.0 | 4.82e-01 | 87.2% | 100.0% |
| 1uokA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.65 | 39.0 | 4.67e-01 | 96.6% | 88.5% |
| 5ewnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 54.0 | 4.63e-01 | 88.9% | 97.8% |
| 3zxaC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 58.0 | 4.95e-01 | 100.0% | 91.0% |
| 1smvC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 57.0 | 4.59e-01 | 100.0% | 91.4% |
| 1c8nC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 56.0 | 4.55e-01 | 100.0% | 90.0% |
| 4fy1100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 54.0 | 4.43e-01 | 100.0% | 88.9% |
| 6mrmC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 53.0 | 4.65e-01 | 95.7% | 98.8% |
| 4djmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 30.0 | 3.53e-01 | 98.3% | 68.8% |
| 4rft000 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 50.0 | 4.47e-01 | 91.5% | 96.3% |
| 4dlqA03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.58 | 33.0 | 2.78e-01 | 97.4% | 32.8% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.56 | 42.0 | 4.22e-01 | 100.0% | 76.5% |
| 3h7jA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 41.0 | 4.27e-01 | 98.3% | 80.9% |
| 5zbeA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 40.0 | 4.24e-01 | 97.4% | 82.2% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 40.0 | 4.30e-01 | 99.1% | 87.9% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 4.55e-01 | 99.1% | 97.8% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.88e-01 | 100.0% | 75.0% |
| 3bvxA05 | 2.60.40.1360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 4.40e-01 | 98.3% | 93.8% |
| 3cq9A00 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.54 | 32.0 | 2.72e-01 | 96.6% | 34.2% |
| 3zjaA01 | 2.60.40.1890 | Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone | 0.54 | 35.0 | 3.71e-01 | 96.6% | 73.6% |
| 3bryA00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.53 | 41.0 | 2.85e-01 | 82.9% | 59.6% |
| 4dloA03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.51 | 33.0 | 2.89e-01 | 96.6% | 44.4% |
| 3jafA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 42.0 | 3.40e-01 | 100.0% | 47.9% |
| 4igbB02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 4.16e-01 | 99.1% | 76.2% |
| 4i0nA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 47.0 | 3.55e-01 | 100.0% | 69.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2142463 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.92 | 90.0 | 5.53e-01 | 100.0% | 90.4% |
| 1878989 | 10.2.1.29 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid | 0.68 | 58.0 | 4.77e-01 | 91.5% | 96.1% |
| 3211239 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.59 | 38.0 | 3.98e-01 | 100.0% | 70.5% |
| 3740013 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 31.0 | 2.15e-01 | 99.1% | 16.9% |
| 5059784 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 33.0 | 3.73e-01 | 100.0% | 77.8% |
| 3564301 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.54 | 43.0 | 4.59e-01 | 84.6% | 100.0% |
| 3933721 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.52 | 43.0 | 3.82e-01 | 87.2% | 99.4% |
| 3388763 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.83e-01 | 100.0% | 65.2% |
| 5069953 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.52 | 44.0 | 3.99e-01 | 90.6% | 96.8% |
| 3225193 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.52 | 43.0 | 4.10e-01 | 89.7% | 91.4% |
| 5058190 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.52 | 44.0 | 4.59e-01 | 91.5% | 98.1% |
| 5032679 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 42.0 | 3.97e-01 | 88.0% | 99.3% |
| 3449173 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.51 | 43.0 | 4.07e-01 | 91.5% | 98.6% |
| 4991105 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 46.0 | 3.89e-01 | 98.3% | 72.6% |
| 148460 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.50 | 41.0 | 3.45e-01 | 100.0% | 52.6% |
D2
medium
residues 82-116_202-265