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VP2
Euk-VirGuangxi_orbivirus
VP2__YP_009551623__Guangxi_orbivirus__2306813
Identity
- Accession:
- YP_009551623 ↗
- Protein ID:
- VP2
- Kingdom:
- euk
Quality
80.3
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Orbivirus›
Guangxi_orbivirus
TaxID: 2306813
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 728-894
Domain cluster:
rep: VP3__YP_009507697__Eubenangee_virus__40056__D698-861
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 205.6 | 1.30e-60 | 100.0% | 18.8% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 25.0 | 2.53e-01 | 73.1% | 43.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1409638 | 4064.1.1.1 ↗ | a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3 | 0.95 | 86.0 | 5.19e-01 | 100.0% | 17.6% |
| 2589759 | 4064.1.1.2 ↗ | a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Rota_VP2 | 0.55 | 50.0 | 3.14e-01 | 97.0% | 82.1% |
| 3994785 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.55 | 15.0 | 2.63e-01 | 74.9% | 70.0% |
| 5072339 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.51 | 19.0 | 2.56e-01 | 92.2% | 60.0% |
D2
medium
residues 91-107_311-328_614-709
Domain cluster:
rep: inner_core_protein__YP_009158883__Wad_Medani_virus__40067__D62-84_279-316_591-701
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 113.6 | 8.40e-33 | 74.1% | 10.8% |
D3
medium
residues 108-256
Domain cluster:
rep: VP3__YP_009345881__Orbivirus_SX-2017a__1955493__D82-117_141-226
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 183.0 | 9.20e-54 | 100.0% | 16.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1409638 | 4064.1.1.1 ↗ | a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3 | 0.93 | 90.0 | 5.34e-01 | 100.0% | 16.8% |
| 4963940 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 21.0 | 2.98e-01 | 98.0% | 67.1% |
| 3174487 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.53 | 41.0 | 3.15e-01 | 83.2% | 89.6% |
D4
medium
residues 257-310_486-522_542-590_710-725_907-937
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 96.6 | 1.20e-27 | 50.3% | 12.1% |
| PF01700.23 | Orbi_VP3 | 59.8 | 1.60e-16 | 29.9% | 6.0% |
D5
medium
residues 394-485_523-541_591-613
Domain cluster:
rep: VP3__YP_009507697__Eubenangee_virus__40056__D361-409_509-586
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 133.6 | 8.00e-39 | 70.9% | 10.2% |