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VP2

Euk-Vir

Rotavirus_J

VP2__YP_010086026__Rotavirus_J__1929964

Identity

Accession:
YP_010086026 ↗
Protein ID:
VP2
Kingdom:
euk

Quality

53.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-100
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25649.1 best Rotavirus_VP2 28.3 5.90e-07 100.0% 9.7%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.88 69.0 5.44e-01 82.0% 61.6%
5dn7A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.81 64.0 4.66e-01 83.0% 34.2%
3fhnA01 6.10.280.210 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A 0.77 61.0 4.96e-01 84.0% 56.0%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.77 54.0 5.16e-01 73.0% 80.2%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.77 53.0 4.93e-01 72.0% 67.5%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.76 63.0 5.03e-01 87.0% 90.4%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.76 58.0 5.70e-01 82.0% 84.4%
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.75 58.0 4.93e-01 83.0% 51.9%
1i5pA02 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.72 65.0 4.96e-01 100.0% 49.1%
3ebbA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.72 55.0 4.09e-01 83.0% 31.8%
6w08A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.70 54.0 3.73e-01 83.0% 74.9%
3l09A01 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 54.0 5.47e-01 83.0% 98.0%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.69 52.0 4.26e-01 79.0% 62.4%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.69 48.0 4.63e-01 72.0% 77.0%
6dcjA02 1.25.40.650 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 48.0 4.77e-01 72.0% 95.2%
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.69 57.0 5.21e-01 89.0% 74.0%
1ihgA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 49.0 4.37e-01 95.0% 52.4%
2xl4A00 1.20.120.1420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain 0.68 51.0 4.46e-01 78.0% 72.8%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 47.0 5.22e-01 73.0% 96.0%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 54.0 4.32e-01 90.0% 54.4%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 41.0 4.55e-01 74.0% 80.8%
1qgrA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 56.0 3.29e-01 97.0% 11.0%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 49.0 4.54e-01 82.0% 70.7%
4ksaA02 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.65 51.0 4.63e-01 85.0% 84.7%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 44.0 4.37e-01 100.0% 66.7%
2jekA00 1.25.40.380 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein of unknown function DUF1810 0.65 49.0 4.36e-01 80.0% 68.6%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 34.0 3.81e-01 75.0% 64.6%
2qfcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 47.0 3.45e-01 84.0% 28.2%
3o4zA02 1.25.40.720 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain 0.63 50.0 4.07e-01 87.0% 64.9%
3k8pC01 1.20.58.1440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 43.0 4.30e-01 72.0% 88.6%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 45.0 5.06e-01 80.0% 100.0%
1b3uA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 53.0 3.26e-01 94.0% 19.7%
2id6A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 43.0 3.80e-01 75.0% 67.5%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 46.0 3.47e-01 82.0% 84.1%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.59 46.0 4.34e-01 85.0% 84.1%
2y1vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 3.56e-01 88.0% 41.6%
1k8kG00 1.25.40.190 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 0.59 46.0 4.17e-01 84.0% 82.7%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.58 42.0 3.61e-01 74.0% 55.8%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.58 50.0 4.41e-01 96.0% 72.8%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 47.0 4.92e-01 99.0% 94.6%
1moqA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 42.0 3.27e-01 80.0% 83.9%
4xpwA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.54 47.0 4.26e-01 93.0% 73.3%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.53 46.0 3.58e-01 95.0% 48.8%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 46.0 4.31e-01 99.0% 79.4%
4ib4A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 46.0 3.34e-01 99.0% 49.5%
3bniB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 39.0 3.34e-01 83.0% 66.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3176648 603.1.1.6 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.87 63.0 4.87e-01 75.0% 99.5%
3597047 603.1.1.17 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.85 66.0 4.68e-01 80.0% 48.3%
4322672 109.4.1.1457 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27772 0.83 63.0 3.73e-01 79.0% 14.4%
4003697 109.25.1.0 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.81 64.0 6.49e-01 84.0% 92.0%
4024521 109.25.1.0 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.81 56.0 5.77e-01 71.0% 75.8%
3608974 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.80 68.0 4.73e-01 91.0% 35.9%
3625366 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.80 67.0 5.31e-01 90.0% 46.7%
3795514 109.4.1.1487 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1_C_2 0.79 60.0 3.88e-01 80.0% 19.3%
3829877 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 68.0 5.49e-01 94.0% 54.5%
3606649 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.78 55.0 4.06e-01 73.0% 48.0%
3887898 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 63.0 5.04e-01 85.0% 58.9%
3892831 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 62.0 4.70e-01 84.0% 41.4%
3741034 109.4.1.1858 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1_fung 0.77 60.0 4.70e-01 87.0% 40.5%
3592870 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 60.0 6.05e-01 83.0% 83.0%
3232756 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.75 56.0 6.04e-01 78.0% 100.0%
3995298 109.4.1.506 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 0.73 63.0 4.26e-01 93.0% 27.2%
3822540 109.4.1.1310 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.73 57.0 4.11e-01 82.0% 31.7%
3577933 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 57.0 5.46e-01 90.0% 73.9%
3254507 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 54.0 4.36e-01 86.0% 42.1%
3635082 109.4.1.348 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3517 0.70 53.0 4.11e-01 88.0% 36.4%
3249775 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 56.0 3.61e-01 86.0% 18.1%
3276065 109.4.1.506 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 0.70 58.0 3.97e-01 90.0% 28.4%
3813462 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 55.0 4.97e-01 86.0% 66.7%
3620970 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 55.0 4.10e-01 86.0% 36.0%
3168689 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 55.0 4.30e-01 86.0% 53.3%
3962443 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 54.0 4.68e-01 87.0% 68.8%
3742706 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.68 60.0 5.01e-01 100.0% 66.1%
3902172 109.4.1.603 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAF1_subA 0.68 54.0 3.61e-01 99.0% 21.3%
3504901 109.4.1.1581 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29127 0.67 52.0 4.98e-01 87.0% 70.0%
3477364 109.4.1.508 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KBP_C 0.67 60.0 3.60e-01 98.0% 19.6%
3724505 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 50.0 4.14e-01 79.0% 54.4%
3706124 109.4.1.218 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP 0.67 52.0 4.34e-01 86.0% 46.7%
3584462 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 60.0 4.73e-01 100.0% 74.1%
3283297 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 54.0 3.87e-01 91.0% 40.1%
3725670 627.1.1.0 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain 0.65 47.0 4.12e-01 75.0% 76.6%
3997271 109.4.1.30 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT 0.64 53.0 3.96e-01 91.0% 46.5%
3705411 109.4.1.777 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 49.0 3.37e-01 83.0% 24.5%
3600627 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 47.0 3.79e-01 88.0% 41.1%
3764955 106.1.1.13 alpha arrays › Globin-like › Globin-like › Globin-like › FWWh 0.61 44.0 3.80e-01 75.0% 78.1%
3995490 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 4.61e-01 100.0% 63.0%
4012726 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 47.0 4.43e-01 84.0% 88.0%
4310284 2498.1.1.143 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF3318 0.60 52.0 4.10e-01 93.0% 96.5%
3249226 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.89e-01 98.0% 47.5%
3954422 633.5.1.0 alpha bundles › Bromodomain-like › LemA-like › LemA-like 0.56 49.0 4.28e-01 98.0% 64.8%
4529712 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 42.0 4.23e-01 86.0% 81.0%
3350314 109.4.1.927 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN 0.55 46.0 4.07e-01 91.0% 64.1%
5009894 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.51 43.0 2.84e-01 94.0% 22.5%
3406343 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.50 45.0 3.31e-01 100.0% 36.4%
D2 high residues 288-356
PDB
D3 high residues 373-399_688-778
PDB
D4 high residues 437-644
PDB
D5 high residues 793-934
PDB