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VP2
Euk-VirMicromonas_pusilla_reovirus
VP2__YP_654545__Micromonas_pusilla_reovirus__338781
Identity
- Accession:
- YP_654545 ↗
- Protein ID:
- VP2
- Kingdom:
- euk
Quality
59.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 115-185
D2
medium
residues 47-107_193-298
D3
medium
residues 362-536
D4
medium
residues 537-571_669-782
D5
medium
residues 572-668
D6
medium
residues 916-1006
D7
medium
residues 1042-1127
D8
medium
residues 1147-1216_1296-1368
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rfbA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 23.0 | 3.00e-01 | 87.4% | 64.0% |
| 2r61A02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 22.0 | 2.85e-01 | 86.7% | 61.6% |
| 6cz4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 25.0 | 3.08e-01 | 99.3% | 69.8% |
| 5tdeA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 35.0 | 3.52e-01 | 93.0% | 64.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4228935 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 36.0 | 4.24e-01 | 95.8% | 100.0% |
| 4229786 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 24.0 | 3.13e-01 | 96.5% | 78.6% |
| 4047862 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 31.0 | 3.82e-01 | 95.1% | 98.8% |
| 4069797 | 11.1.1.335 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N | 0.50 | 22.0 | 2.61e-01 | 77.6% | 54.0% |