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VP2_minor_capsid_protein

Euk-Vir

Alphapolyomavirus_chlopygerythrus

VP2_minor_capsid_protein__YP_007188587__Alphapolyomavirus_chlopygerythrus__1891719

Identity

Accession:
YP_007188587 ↗
Protein ID:
VP2_minor_capsid_protein
Kingdom:
euk

Quality

65.0 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Alphapolyomavirus› Alphapolyomavirus_chlopygerythrus

TaxID: 1891719

Cluster

View cluster (96 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-105
PDB
D2 high residues 131-219
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00761.26 best Polyoma_coat2 52.1 1.20e-13 70.8% 12.7%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dbgA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 44.0 3.00e-01 91.0% 72.6%
1jo0A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.53 34.0 3.37e-01 100.0% 58.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943581 328.4.1.0 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like 0.54 35.0 3.68e-01 100.0% 72.5%
4976536 328.4.1.1 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.52 35.0 3.44e-01 100.0% 63.2%
4173694 2003.6.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase 0.52 39.0 2.76e-01 83.1% 94.8%
4091361 2003.6.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase 0.51 38.0 2.72e-01 82.0% 93.7%
3509118 2003.6.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase 0.51 38.0 2.70e-01 82.0% 89.7%