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VP2_protein

Euk-Vir

Tellina_virus_1

VP2_protein__YP_009509074__Tellina_virus_1__321302

Identity

Accession:
YP_009509074 ↗
Protein ID:
VP2_protein
Kingdom:
euk

Quality

63.0 mean pLDDT

Taxonomy

Orthornavirae› Birnaviridae› Telnavirus› Tellina_virus_1

TaxID: 321302

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-175_359-441
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337275__Changjiang_tombus-like_virus_14__1922807__D50-279
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01766.24 best Birna_VP2 162.2 3.20e-47 64.0% 31.9%
PF01766.24 Birna_VP2 83.4 2.60e-23 37.8% 18.3%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wcdJ01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.92 89.0 8.09e-01 100.0% 91.1%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.75 68.0 6.04e-01 95.0% 88.0%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 67.0 5.96e-01 95.0% 98.3%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 31.0 3.79e-01 70.7% 64.3%
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 34.0 4.43e-01 93.7% 84.7%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.67 32.0 4.55e-01 71.6% 96.1%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 46.0 5.07e-01 76.1% 84.7%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.66 36.0 4.84e-01 75.7% 100.0%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 28.0 4.08e-01 73.0% 86.3%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 48.0 4.41e-01 76.6% 58.4%
2y0oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 33.0 3.74e-01 71.2% 62.0%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 49.0 5.04e-01 76.6% 81.7%
2iuwA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.65 32.0 3.34e-01 72.5% 48.8%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.63 46.0 5.19e-01 74.3% 99.4%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.63 33.0 3.31e-01 73.9% 48.6%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 46.0 5.03e-01 75.7% 97.8%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.38e-01 76.6% 80.4%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.36e-01 76.6% 90.8%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 4.49e-01 73.9% 95.6%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 4.25e-01 76.6% 67.9%
7u6iA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.60 34.0 3.32e-01 74.3% 49.6%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.59 32.0 4.17e-01 73.9% 95.0%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 26.0 3.92e-01 73.0% 96.8%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.58 34.0 4.36e-01 74.8% 98.4%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 33.0 4.09e-01 72.5% 87.1%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 33.0 4.18e-01 73.4% 97.7%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 27.0 3.79e-01 76.1% 95.3%
4b60A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 34.0 3.98e-01 71.2% 85.9%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.55 32.0 4.09e-01 70.7% 97.7%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 34.0 4.20e-01 78.8% 99.3%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 26.0 3.79e-01 77.5% 100.0%
1vphB00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.54 34.0 4.21e-01 72.5% 100.0%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.53 26.0 3.33e-01 73.9% 78.0%
2vovA00 2.60.120.1220 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 3.38e-01 71.6% 85.9%
1mkfA01 2.60.40.1330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 31.0 3.28e-01 72.5% 62.8%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.51 33.0 4.00e-01 86.5% 100.0%
4fo9A01 2.60.120.780 Mainly Beta › Sandwich › Jelly Rolls › PINIT domain 0.51 31.0 3.77e-01 97.3% 92.4%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 31.0 3.88e-01 90.1% 100.0%
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.50 30.0 3.40e-01 93.7% 76.4%
2kxtA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.50 30.0 3.44e-01 94.1% 76.8%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4883090 10.2.1.20 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Birna_VP2 0.92 89.0 6.91e-01 100.0% 93.0%
3022795 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.79 75.0 5.75e-01 99.5% 79.7%
1114663 10.2.1.22 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.75 71.0 6.14e-01 99.5% 86.1%
3220427 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.73 33.0 4.70e-01 70.7% 88.6%
5060962 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 33.0 4.69e-01 72.5% 99.0%
3254415 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.67 31.0 4.44e-01 75.7% 91.4%
3783891 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.67 32.0 4.39e-01 71.2% 87.0%
3413879 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.67 33.0 4.70e-01 78.4% 99.0%
3833238 10.32.1.194 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_N 0.67 36.0 4.88e-01 71.2% 100.0%
3894892 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.67 32.0 4.45e-01 71.6% 90.9%
5042684 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 37.0 4.91e-01 98.2% 99.2%
5071851 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 32.0 4.64e-01 71.6% 100.0%
3437261 10.32.1.194 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_N 0.67 36.0 4.84e-01 72.5% 100.0%
4960907 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 27.0 3.84e-01 72.5% 79.0%
4172901 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 36.0 4.77e-01 73.0% 100.0%
4531272 10.32.1.177 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.65 35.0 4.69e-01 84.7% 98.3%
1878989 10.2.1.29 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid 0.65 49.0 5.08e-01 76.6% 96.1%
4557440 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.65 33.0 4.58e-01 77.9% 100.0%
4979173 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 33.0 4.53e-01 80.6% 100.0%
3240186 10.32.1.230 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_N 0.64 36.0 4.50e-01 70.3% 90.0%
4960627 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 34.0 4.44e-01 71.6% 93.9%
3563711 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.64 33.0 3.60e-01 80.6% 58.4%
5048055 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 33.0 4.43e-01 79.7% 97.3%
3703651 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 36.0 4.65e-01 73.4% 97.6%
5069182 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 32.0 4.17e-01 82.0% 84.8%
4958335 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 34.0 3.86e-01 78.4% 67.9%
3889465 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 33.0 4.35e-01 70.3% 93.9%
3749225 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.63 28.0 3.21e-01 73.9% 55.2%
5040182 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 33.0 4.47e-01 83.3% 100.0%
4985871 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 31.0 4.41e-01 70.7% 100.0%
4941297 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 30.0 4.31e-01 72.1% 100.0%
152891 10.12.1.52 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.62 38.0 3.27e-01 86.5% 39.5%
3480786 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.61 34.0 3.90e-01 77.9% 72.5%
None — 0.61 37.0 3.21e-01 86.5% 39.0%
5039047 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 33.0 4.46e-01 72.5% 100.0%
3199160 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 31.0 4.29e-01 73.9% 100.0%
4166998 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 37.0 4.65e-01 89.6% 100.0%
3272798 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.60 37.0 4.60e-01 72.5% 99.3%
4181607 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 33.0 4.43e-01 71.2% 100.0%
5046044 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 32.0 4.11e-01 71.2% 89.6%
3598703 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 36.0 4.34e-01 73.4% 90.3%
5005760 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 33.0 4.26e-01 71.2% 92.3%
4982351 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.59 33.0 4.34e-01 74.3% 100.0%
4927390 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 33.0 4.34e-01 98.6% 100.0%
5046664 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 33.0 4.29e-01 70.7% 99.2%
3875909 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 37.0 4.23e-01 74.3% 84.2%
3249250 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.58 26.0 3.96e-01 73.0% 100.0%
3492104 10.32.1.41 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 0.58 34.0 4.21e-01 78.8% 93.3%
4631095 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 36.0 4.26e-01 73.0% 92.7%
3926732 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.55 36.0 4.27e-01 94.1% 96.0%
3486965 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 33.0 3.97e-01 72.1% 88.0%
3256840 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.55 31.0 4.05e-01 71.2% 100.0%
3252754 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 32.0 4.07e-01 74.8% 96.9%
3875549 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 34.0 3.59e-01 79.3% 69.2%
3893737 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 37.0 4.12e-01 73.0% 88.8%
3868830 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 33.0 3.88e-01 72.5% 85.6%
4954605 10.1.2.186 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF3344 0.53 30.0 3.92e-01 73.0% 97.6%
3719077 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 38.0 3.91e-01 73.4% 100.0%
3916503 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.51 37.0 4.12e-01 73.0% 95.3%
3257381 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 36.0 4.21e-01 73.4% 100.0%
3992271 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 35.0 3.94e-01 71.6% 89.7%
1852013 11.1.5.40 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › BNR_assoc_N 0.50 34.0 3.81e-01 73.0% 88.7%
D2 high residues 219-347
PDB