VP39

Euk-Vir

Operophtera_brumata_nucleopolyhedrovirus

VP39__YP_009552634__Operophtera_brumata_nucleopolyhedrovirus__1046267

Identity

75.5 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Operophtera_brumata_nucleopolyhedrovirus

TaxID: 1046267

View cluster (46 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 88-245

PDB

Domain cluster: rep: viral_protein_39__YP_009116993__Pseudoplusia_includens_SNPV_IE__1592335__D90-242

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04501.18 best	Baculo_VP39	84.7	1.10e-23	99.4%	64.8%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.55	25.0	3.32e-01	85.4%	76.7%
3thxB04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.50	29.0	3.17e-01	76.6%	67.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3351897	109.4.1.1260 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long	0.51	45.0	3.17e-01	94.3%	83.0%

D2 medium residues 34-54_263-296

PDB

Domain cluster: representative