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VP3

Euk-Vir

American_grass_carp_reovirus

VP3__YP_001837096__American_grass_carp_reovirus__465447

Identity

Accession:
YP_001837096 ↗
Protein ID:
VP3
Kingdom:
euk

Quality

79.9 mean pLDDT

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 445-777_807-850
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF22033.2 best Lamba1_VP3 481.6 6.30e-144 88.6% 35.0%
PF22033.2 Lamba1_VP3 45.8 2.80e-12 12.5% 4.6%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.96 95.0 6.54e-01 100.0% 39.1%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 21.0 3.36e-01 73.5% 100.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2992478 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.99 97.0 6.64e-01 100.0% 37.8%
4881251 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.96 95.0 7.07e-01 100.0% 51.2%
3396505 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.56 32.0 4.13e-01 71.1% 95.8%
3408006 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.55 31.0 4.08e-01 85.1% 94.9%
3402871 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.55 31.0 4.02e-01 71.1% 94.1%
3570235 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.54 31.0 4.01e-01 84.9% 94.5%
3404169 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.54 31.0 3.98e-01 70.6% 94.5%
D2 high residues 979-1148
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22033.2 best Lamba1_VP3 201.7 2.40e-59 100.0% 17.7%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.93 90.0 5.34e-01 100.0% 16.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2992478 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.98 97.0 5.64e-01 100.0% 15.8%
4881251 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.93 89.0 5.53e-01 100.0% 21.4%
1567045 2485.1.1.41 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_4 0.55 32.0 3.80e-01 78.8% 82.6%
D3 medium residues 364-444
PDB
Domain cluster: rep: VP3__YP_009351851__Fall_chinook_aquareovirus__1963254__D373-442
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22033.2 best Lamba1_VP3 100.0 1.20e-28 100.0% 8.5%
D4 medium residues 778-806_853-978
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22033.2 best Lamba1_VP3 155.9 1.60e-45 81.9% 13.2%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.89 85.0 5.00e-01 100.0% 19.4%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.67 16.0 2.97e-01 80.0% 65.2%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.60 20.0 3.27e-01 86.5% 80.4%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 33.0 3.86e-01 76.8% 82.9%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.53 22.0 2.70e-01 76.8% 57.7%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.52 22.0 2.76e-01 83.2% 62.2%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 35.0 3.86e-01 79.4% 85.6%
3zojA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.51 44.0 3.75e-01 95.5% 79.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2992478 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.90 86.0 5.03e-01 100.0% 18.8%
4881251 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.88 85.0 5.17e-01 100.0% 25.2%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 20.0 2.71e-01 83.2% 43.2%
3961965 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.66 16.0 2.54e-01 80.6% 47.7%
3781956 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.57 22.0 3.07e-01 82.6% 70.7%
3693662 5048.1.1.1 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP 0.52 43.0 3.45e-01 89.7% 75.6%