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VP3

Euk-Vir

Rotavirus_D_chicken_05V0049_DEU_2005

VP3__YP_003896049__Rotavirus_D_chicken_05V0049_DEU_2005__884200

Identity

Accession:: YP_003896049 ↗
Protein ID:: VP3
Kingdom:: euk

Quality

76.3 mean pLDDT

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-117

PDB

D2 high residues 575-676

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06929.16 best	Rotavirus_VP3	87.3	1.20e-24	100.0%	13.4%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4xaxB02	1.20.58.1290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain	0.63	38.0	3.90e-01	93.1%	60.6%
1kaeA03	1.20.5.1300	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.63	31.0	4.10e-01	78.4%	87.3%
2yxlA01	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.59	43.0	3.82e-01	86.3%	52.0%
2do9A01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.58	37.0	3.98e-01	100.0%	77.4%
1oxjA02	1.25.40.170	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain	0.58	41.0	4.04e-01	73.5%	72.5%
7watB02	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.57	44.0	3.15e-01	84.3%	82.1%
3cf6E03	1.20.870.10	Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1	0.55	44.0	4.05e-01	89.2%	66.4%
3hyuA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.55	49.0	4.43e-01	100.0%	83.0%
3mvcB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.55	48.0	4.27e-01	100.0%	76.6%
2xuvB00	1.10.890.10	Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A	0.54	28.0	3.24e-01	96.1%	69.0%
2jqqA00	1.20.58.1240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	40.0	3.54e-01	81.4%	77.9%
2mpcA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.52	35.0	3.71e-01	99.0%	76.7%
2va8A03	1.10.3380.30	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold ›	0.52	47.0	3.65e-01	100.0%	95.9%
3ubcA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	45.0	4.19e-01	100.0%	84.7%
1iyhB02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.50	36.0	3.60e-01	76.5%	85.2%
1wj5A01	1.10.10.980	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain	0.50	38.0	3.90e-01	80.4%	96.9%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4950744	4271.1.1.0 ↗	alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like	0.64	49.0	3.90e-01	90.2%	40.5%
3488061	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	47.0	3.60e-01	79.4%	54.8%
3611319	109.4.1.32 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G	0.57	50.0	3.52e-01	100.0%	53.6%
3487854	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	47.0	3.14e-01	93.1%	38.8%
3255101	109.4.1.682 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N	0.54	40.0	3.35e-01	81.4%	43.8%
3324831	109.4.1.1282 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24	0.53	41.0	2.79e-01	81.4%	27.3%
4142133	133.1.1.7 ↗	alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › PF28625	0.53	48.0	4.07e-01	100.0%	88.5%
3622874	109.4.1.2473 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, ARM_TT21, ARM_TT21_2nd, ARM_TT21_C, ARM_TT21_5th, ARM_TT21_4th	0.52	45.0	2.64e-01	94.1%	18.1%
3688172	2004.1.1.73 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1	0.51	45.0	2.97e-01	99.0%	23.4%
3584422	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	41.0	3.24e-01	94.1%	77.5%
3180709	4156.1.1.1 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63	0.50	44.0	3.93e-01	99.0%	93.3%
3279916	633.21.1.34 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF7144	0.50	34.0	3.34e-01	70.6%	83.5%

D3 medium residues 216-424

PDB

Domain cluster: rep: IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167229__D19-209

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06929.16 best	Rotavirus_VP3	101.2	7.10e-29	100.0%	26.2%