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VP3

Euk-Vir

Mobuck_virus

VP3__YP_008719913__Mobuck_virus__1408137

Identity

Accession:: YP_008719913 ↗
Protein ID:: VP3
Kingdom:: euk

Quality

82.2 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Orbivirus› Mobuck_virus

TaxID: 1408137

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 716-885

PDB

Domain cluster: rep: VP3__YP_009507697__Eubenangee_virus__40056__D698-861

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	222.1	1.40e-65	100.0%	19.1%

D2 medium residues 47-90

PDB

D3 medium residues 135-159_280-315_607-713

PDB

Domain cluster: rep: inner_core_protein__YP_009158883__Wad_Medani_virus__40067__D62-84_279-316_591-701

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	132.2	2.10e-38	64.3%	11.9%
PF01700.23	Orbi_VP3	44.9	5.10e-12	22.0%	4.1%

D4 medium residues 160-279_887-924

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	156.1	1.20e-45	75.9%	13.4%
PF01700.23	Orbi_VP3	27.0	1.30e-06	23.4%	3.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1409638	4064.1.1.1 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3	0.81	74.0	4.47e-01	95.6%	84.0%
3810358	3012.1.1.3 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › S6PP	0.53	22.0	3.14e-01	80.4%	81.3%

D5 medium residues 379-468

PDB

Domain cluster: rep: VP3__YP_009507713__Lebombo_virus__40057__D446-530

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	131.8	2.80e-38	100.0%	9.9%

D6 medium residues 469-558

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	135.4	2.20e-39	100.0%	10.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wkbA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.64	39.0	3.52e-01	86.7%	44.6%
2jpnA00	1.20.1280.210	Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1	0.62	33.0	3.48e-01	80.0%	57.0%
2zy9A03	1.10.357.20	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain	0.56	49.0	4.00e-01	100.0%	54.6%
1j30A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.55	39.0	3.45e-01	98.9%	48.9%
1f6fA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.54	43.0	3.47e-01	87.8%	88.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3726875	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.58	42.0	4.29e-01	94.4%	78.9%
3473665	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.54	40.0	3.99e-01	94.4%	74.7%