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VP3
Euk-VirDrosophila_immigrans_Nora_virus
VP3__YP_009047191__Drosophila_immigrans_Nora_virus__1500866
Identity
- Accession:
- YP_009047191 ↗
- Protein ID:
- VP3
- Kingdom:
- euk
Quality
90.2
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 199-290
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mc2A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.70 | 64.0 | 4.91e-01 | 100.0% | 96.6% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 39.0 | 3.38e-01 | 100.0% | 39.3% |
| 2f8xC02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.66 | 60.0 | 4.98e-01 | 100.0% | 93.7% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 35.0 | 4.10e-01 | 98.9% | 74.2% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 37.0 | 3.26e-01 | 100.0% | 40.0% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 36.0 | 2.99e-01 | 100.0% | 32.7% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 38.0 | 3.10e-01 | 100.0% | 32.8% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 34.0 | 3.87e-01 | 100.0% | 74.2% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 38.0 | 4.25e-01 | 100.0% | 84.7% |
| 2d9tA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 32.0 | 4.05e-01 | 100.0% | 100.0% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.57 | 40.0 | 3.99e-01 | 98.9% | 70.2% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 35.0 | 3.39e-01 | 100.0% | 54.8% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 34.0 | 3.74e-01 | 100.0% | 76.4% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 31.0 | 3.18e-01 | 100.0% | 56.3% |
| 5bncB01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 42.0 | 3.66e-01 | 83.7% | 97.3% |
| 2arzA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 44.0 | 3.83e-01 | 89.1% | 100.0% |
| 2hhzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 41.0 | 3.61e-01 | 81.5% | 96.4% |
| 2gzbB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 47.0 | 3.98e-01 | 100.0% | 90.2% |
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.54 | 47.0 | 4.28e-01 | 100.0% | 96.1% |
| 1r5tA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 32.0 | 2.80e-01 | 100.0% | 39.0% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 36.0 | 3.12e-01 | 100.0% | 45.8% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 42.0 | 3.38e-01 | 90.2% | 94.2% |
| 3dshA01 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 46.0 | 3.61e-01 | 100.0% | 86.1% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 40.0 | 3.18e-01 | 88.0% | 81.8% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 40.0 | 3.35e-01 | 85.9% | 89.3% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 37.0 | 3.55e-01 | 87.0% | 66.4% |
| 3stjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 36.0 | 3.78e-01 | 91.3% | 81.2% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 37.0 | 2.96e-01 | 89.1% | 35.5% |
| 5xgbA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 39.0 | 3.60e-01 | 82.6% | 78.0% |
| 5yjlD01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 39.0 | 3.46e-01 | 85.9% | 95.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3339169 | 4.1.1.415 ↗ | beta barrels › SH3 › SH3 › SH3 › PNPOx_N | 0.77 | 45.0 | 4.68e-01 | 100.0% | 62.4% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.75 | 36.0 | 5.00e-01 | 100.0% | 95.6% |
| 4183853 | 4.1.1.435 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29216 | 0.69 | 41.0 | 4.63e-01 | 100.0% | 78.6% |
| 4034320 | 4.1.1.398 ↗ | beta barrels › SH3 › SH3 › SH3 › YolD | 0.68 | 40.0 | 4.51e-01 | 100.0% | 77.9% |
| 3281870 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 40.0 | 3.52e-01 | 100.0% | 45.9% |
| 3280641 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.61 | 38.0 | 3.71e-01 | 100.0% | 57.0% |
| 3972550 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.61 | 36.0 | 3.59e-01 | 100.0% | 55.0% |
| 5051722 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 31.0 | 3.03e-01 | 100.0% | 48.0% |
| 3374528 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 48.0 | 3.23e-01 | 92.4% | 58.5% |
| 4387099 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.56 | 38.0 | 4.01e-01 | 100.0% | 80.0% |
| 3222541 | 4252.1.1.15 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF30558 | 0.55 | 48.0 | 3.68e-01 | 100.0% | 84.4% |
| 3395610 | 4252.1.1.15 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF30558 | 0.54 | 47.0 | 3.71e-01 | 100.0% | 93.7% |
| 3222818 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.53 | 42.0 | 3.14e-01 | 88.0% | 98.0% |
| 3060391 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.53 | 46.0 | 4.30e-01 | 97.8% | 91.3% |
| 3065351 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.52 | 48.0 | 4.25e-01 | 100.0% | 89.8% |
| 305361 | 1.1.5.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 | 0.52 | 42.0 | 3.38e-01 | 90.2% | 94.2% |
| 3477290 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.50 | 40.0 | 3.08e-01 | 89.1% | 87.8% |
D2
medium
residues 7-168
Domain cluster:
representative