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VP3
Euk-VirOrbivirus_SX-2017a
VP3__YP_009345881__Orbivirus_SX-2017a__1955493
Identity
- Accession:
- YP_009345881 ↗
- Protein ID:
- VP3
- Kingdom:
- euk
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 699-865
Domain cluster:
rep: VP3__YP_009507697__Eubenangee_virus__40056__D698-861
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 239.0 | 1.10e-70 | 100.0% | 18.8% |
D2
medium
residues 61-81_274-305_618-662
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 43.5 | 1.30e-11 | 45.9% | 5.0% |
| PF01700.23 | Orbi_VP3 | 49.4 | 2.10e-13 | 40.8% | 4.1% |
D3
medium
residues 82-117_141-226
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 120.0 | 9.90e-35 | 73.8% | 9.8% |
| PF01700.23 | Orbi_VP3 | 36.3 | 2.00e-09 | 29.5% | 4.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1409638 | 4064.1.1.1 ↗ | a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3 | 0.94 | 91.0 | 5.24e-01 | 100.0% | 16.4% |
| 1115411 | 4064.1.1.6 ↗ | a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › VP1-like_C | 0.63 | 57.0 | 3.50e-01 | 100.0% | 28.4% |
| 4197044 | 3433.1.2.0 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain | 0.52 | 21.0 | 3.07e-01 | 100.0% | 86.0% |
| 3805761 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.51 | 24.0 | 3.05e-01 | 100.0% | 72.0% |
D4
medium
residues 118-140_259-273_599-617_663-693_886-901
Domain cluster:
rep: VP3__YP_009507697__Eubenangee_virus__40056__D226-299_587-622_880-900
D5
medium
residues 306-414
Domain cluster:
rep: inner_core__YP_008658418__Wallal_virus__40061__D305-333_360-411
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 181.8 | 2.10e-53 | 100.0% | 12.3% |
D6
medium
residues 450-598
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 235.3 | 1.40e-69 | 100.0% | 16.7% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.65 | 25.0 | 3.58e-01 | 74.5% | 71.8% |
| 1n73D00 | 1.20.5.50 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 25.0 | 3.11e-01 | 87.9% | 73.3% |