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VP3
Euk-VirEubenangee_virus
VP3__YP_009507697__Eubenangee_virus__40056
Identity
- Accession:
- YP_009507697 ↗
- Protein ID:
- VP3
- Kingdom:
- euk
Quality
83.0
mean pLDDT
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 698-861
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 231.1 | 2.70e-68 | 100.0% | 18.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lfvA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.51 | 19.0 | 2.36e-01 | 95.7% | 49.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1409638 | 4064.1.1.1 ↗ | a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3 | 0.96 | 88.0 | 5.28e-01 | 100.0% | 17.4% |
| 2589759 | 4064.1.1.2 ↗ | a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Rota_VP2 | 0.62 | 48.0 | 3.06e-01 | 97.0% | 16.3% |
D2
medium
residues 226-299_587-622_880-900
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 119.9 | 1.10e-34 | 57.2% | 8.2% |
| PF01700.23 | Orbi_VP3 | 33.6 | 1.30e-08 | 28.2% | 4.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lvqE02 | 1.25.40.950 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 24.0 | 3.12e-01 | 92.4% | 74.3% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 33.0 | 3.63e-01 | 83.2% | 75.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5062494 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.54 | 43.0 | 3.61e-01 | 84.0% | 68.0% |
| 5042930 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.54 | 42.0 | 3.48e-01 | 84.0% | 68.1% |
| 4442629 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.51 | 40.0 | 3.28e-01 | 84.0% | 99.2% |
| 5038479 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.50 | 39.0 | 3.22e-01 | 83.2% | 71.6% |
D3
medium
residues 361-409_509-586
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01700.23 best | Orbi_VP3 | 123.6 | 8.40e-36 | 62.2% | 8.8% |
| PF01700.23 | Orbi_VP3 | 68.4 | 4.10e-19 | 40.9% | 5.6% |