←Back to structures

VP3

Euk-Vir

Lebombo_virus

VP3__YP_009507713__Lebombo_virus__40057

Identity

Accession:: YP_009507713 ↗
Protein ID:: VP3
Kingdom:: euk

Quality

77.3 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Orbivirus› Lebombo_virus

TaxID: 40057

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 776-945

PDB

Domain cluster: rep: VP3__YP_009507697__Eubenangee_virus__40056__D698-861

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	231.4	2.20e-68	100.0%	19.2%

D2 medium residues 152-304

PDB

Domain cluster: rep: VP3__YP_009345881__Orbivirus_SX-2017a__1955493__D82-117_141-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	197.0	5.20e-58	100.0%	17.1%

D3 medium residues 305-376_952-981

PDB

Domain cluster: rep: VP3__YP_009507724__Orungo_virus__40058__D231-275_885-906

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	114.0	6.30e-33	71.6%	8.0%

D4 medium residues 446-530

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	131.7	2.90e-38	100.0%	9.5%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4bl7B02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.62	36.0	3.37e-01	97.6%	45.8%
1x23B00	3.10.110.10	Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme	0.58	39.0	3.32e-01	71.8%	63.8%
3njtA02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.56	35.0	3.70e-01	89.4%	71.2%
6wimA02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.55	34.0	3.67e-01	92.9%	73.0%
2p0vA01	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.54	43.0	2.77e-01	88.2%	43.6%
4a9aA01	6.10.140.1070	Special › Helix non-globular › Helix Hairpins ›	0.52	39.0	3.55e-01	78.8%	95.5%
6i7eA01	1.20.58.530	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	42.0	3.45e-01	95.3%	60.6%
2cpmA00	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.51	33.0	3.24e-01	96.5%	60.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1409638	4064.1.1.1 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3	0.96	92.0	5.07e-01	100.0%	9.5%
3850090	4099.1.1.19 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM8	0.61	47.0	4.04e-01	83.5%	72.5%
3912265	316.1.1.6 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21	0.60	51.0	3.71e-01	96.5%	76.9%
3480292	216.1.1.1 ↗	a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con	0.59	40.0	3.19e-01	70.6%	52.4%
3396918	372.2.1.1 ↗	a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU	0.56	49.0	3.50e-01	98.8%	36.2%
3958995	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.52	27.0	3.05e-01	72.9%	64.1%

D5 medium residues 531-674

PDB

Domain cluster: rep: inner_core_protein__YP_009158902__Chobar_Gorge_virus__1679172__D458-493_528-595

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	230.7	3.60e-68	100.0%	16.0%

D6 medium residues 675-773

PDB

Domain cluster: rep: inner_core__YP_008658418__Wallal_virus__40061__D592-697

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	126.1	1.40e-36	100.0%	11.1%