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VP3

Euk-Vir

Orungo_virus

VP3__YP_009507724__Orungo_virus__40058

Identity

Accession:: YP_009507724 ↗
Protein ID:: VP3
Kingdom:: euk

Quality

83.9 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Orbivirus› Orungo_virus

TaxID: 40058

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 704-866

PDB

Domain cluster: rep: VP3__YP_009507697__Eubenangee_virus__40056__D698-861

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	215.4	1.50e-63	100.0%	18.5%

D2 medium residues 36-68_276-304_336-367_567-587

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	44.6	6.10e-12	31.3%	3.6%
PF01700.23	Orbi_VP3	44.6	6.30e-12	29.6%	3.5%

D3 medium residues 69-83_588-702

PDB

Domain cluster: rep: inner_core__YP_008658418__Wallal_virus__40061__D592-697

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	143.3	8.90e-42	90.0%	13.0%

D4 medium residues 84-230_867-884

PDB

Domain cluster: rep: VP3__YP_009345881__Orbivirus_SX-2017a__1955493__D82-117_141-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	188.5	2.00e-55	93.3%	16.7%

D5 medium residues 231-275_885-906

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	51.1	6.40e-14	68.7%	5.0%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ivrA00	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.57	44.0	2.77e-01	86.6%	56.3%
2hfvA01	3.30.70.790	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain	0.55	35.0	3.45e-01	88.1%	57.1%
4bjhB02	3.40.50.1370	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase	0.54	38.0	2.98e-01	74.6%	73.6%
6pqhA02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.54	43.0	2.74e-01	89.6%	54.1%
3a2vD02	3.30.1020.10	Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2	0.53	37.0	3.31e-01	73.1%	97.9%
1c0aA02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.53	41.0	2.71e-01	88.1%	46.5%
4af8A00	3.40.50.12660	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.52	41.0	2.67e-01	88.1%	87.7%
5zg8A02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.51	41.0	2.66e-01	88.1%	57.8%
1fiuA00	3.40.50.10010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Type-2 restriction enzyme NgoMIV	0.51	41.0	2.72e-01	88.1%	76.9%
1dcoA00	3.30.1360.20	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase	0.51	38.0	3.34e-01	88.1%	53.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3701910	327.10.1.12 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › PSP1	0.68	43.0	3.95e-01	91.0%	50.6%
4025591	4340.1.1.0 ↗	a+b complex topology › TFB5-related › TFB5-related › TFB5-related	0.58	39.0	3.61e-01	88.1%	54.1%
3467049	314.1.1.1 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2	0.51	41.0	2.94e-01	88.1%	51.0%
None	—		0.50	44.0	2.55e-01	100.0%	16.3%

D6 medium residues 368-566

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01700.23 best	Orbi_VP3	332.3	7.10e-99	100.0%	22.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3w3aG00	1.10.287.3240	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	29.0	2.87e-01	85.9%	45.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1409638	4064.1.1.1 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Orbi_VP3	0.95	92.0	5.72e-01	100.0%	22.4%
4991648	3281.1.1.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M	0.50	45.0	3.54e-01	96.0%	61.9%
3834065	109.4.1.1257 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2	0.50	24.0	3.20e-01	83.9%	84.5%