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VP3

Euk-Vir

Scophthalmus_maximus_reovirus

VP3__YP_009507750__Scophthalmus_maximus_reovirus__994485

Identity

Accession:: YP_009507750 ↗
Protein ID:: VP3
Kingdom:: euk

Quality

74.7 mean pLDDT

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 194-343_365-396

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22033.2 best	Lamba1_VP3	142.2	2.20e-41	59.9%	11.4%
PF22033.2	Lamba1_VP3	34.0	1.10e-08	18.1%	3.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ej6B00	3.90.1830.10	Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1	0.76	73.0	4.40e-01	100.0%	19.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2992478	4064.1.1.7 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3	0.78	75.0	4.48e-01	100.0%	19.0%

D2 high residues 970-1144

PDB

Domain cluster: rep: VP3__YP_001837096__American_grass_carp_reovirus__465447__D979-1148

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22033.2 best	Lamba1_VP3	244.7	2.40e-72	100.0%	18.3%

D3 medium residues 154-182_457-545_736-771_803-845

PDB

Domain cluster: representative

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22033.2 best	Lamba1_VP3	115.0	3.60e-33	56.4%	9.4%
PF22033.2	Lamba1_VP3	47.1	1.20e-12	22.3%	4.4%
PF22033.2	Lamba1_VP3	46.5	1.80e-12	19.8%	3.8%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ej6B00	3.90.1830.10	Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1	0.92	78.0	4.71e-01	86.3%	64.3%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4881251	4064.1.1.7 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3	0.94	79.0	4.98e-01	85.3%	49.1%
2992478	4064.1.1.7 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3	0.93	90.0	5.43e-01	100.0%	64.5%
4140470	3281.1.1.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M	0.52	47.0	3.57e-01	100.0%	93.5%
3998938	6110.1.1.1 ↗	alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2	0.52	27.0	2.02e-01	88.3%	18.6%

D4 medium residues 183-193_399-456_846-872_1184-1209

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22033.2 best	Lamba1_VP3	61.2	6.50e-17	51.6%	6.2%
PF22033.2	Lamba1_VP3	30.2	1.50e-07	32.0%	3.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dodA00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.61	23.0	2.76e-01	74.6%	48.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2992478	4064.1.1.7 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3	0.91	86.0	4.88e-01	99.2%	95.5%
3512962	3075.1.1.1 ↗	a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU	0.66	23.0	2.85e-01	73.8%	48.8%

D5 medium residues 546-666_690-735

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22033.2 best	Lamba1_VP3	190.9	4.20e-56	74.2%	12.9%
PF22033.2	Lamba1_VP3	39.5	2.40e-10	28.7%	4.8%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ej6B00	3.90.1830.10	Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1	0.95	93.0	5.45e-01	100.0%	18.5%
2nn4A00	1.10.287.760	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like	0.78	26.0	4.54e-01	95.2%	87.1%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.60	34.0	4.18e-01	94.6%	85.3%
3iu6A00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.59	31.0	3.35e-01	100.0%	58.0%
3a8tA02	1.10.287.890	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain	0.58	33.0	3.93e-01	84.4%	82.0%
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.58	33.0	4.05e-01	95.8%	86.2%
2jx0A00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.56	39.0	4.40e-01	86.8%	90.8%
2l7nA00	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.56	41.0	4.13e-01	86.2%	75.0%
1siqA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.53	36.0	3.79e-01	89.8%	74.8%
3tklB01	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	21.0	3.26e-01	85.6%	96.8%
1wolA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.52	37.0	4.24e-01	86.2%	100.0%
5af7B03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.52	35.0	3.76e-01	90.4%	77.7%
3rlbA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.52	40.0	3.98e-01	100.0%	77.3%
1bgcA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.51	31.0	3.24e-01	92.2%	63.3%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2992478	4064.1.1.7 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3	0.99	97.0	5.66e-01	100.0%	17.7%
4881251	4064.1.1.7 ↗	a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3	0.94	91.0	5.60e-01	100.0%	24.0%
4108644	603.1.1.215 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27853	0.59	33.0	4.10e-01	98.2%	85.5%
3404169	5069.1.1.7 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561	0.54	50.0	4.51e-01	100.0%	80.0%
3408006	5069.1.1.7 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561	0.53	49.0	4.51e-01	100.0%	78.6%
3396505	5069.1.1.7 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561	0.53	49.0	4.50e-01	100.0%	80.0%
5041358	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.52	47.0	4.21e-01	100.0%	94.2%
5052251	601.7.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN	0.52	46.0	4.67e-01	99.4%	99.4%
3502146	5001.1.1.3 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2	0.51	43.0	3.62e-01	91.0%	83.4%