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VP3_protein

Euk-Vir

Bat_rotavirus

VP3_protein__YP_009551534__Bat_rotavirus__1340801

Identity

Accession:
YP_009551534 ↗
Protein ID:
VP3_protein
Kingdom:
euk

Quality

59.4 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Rotavirus› Bat_rotavirus

TaxID: 1340801

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 224-442
PDB
Domain cluster: rep: IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167229__D19-209
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06929.16 best Rotavirus_VP3 346.3 5.50e-103 100.0% 30.4%
D2 high residues 699-834
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05213.19 best Corona_NS2A 24.5 2.40e-05 96.3% 35.6%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.79 74.0 6.35e-01 100.0% 95.1%
1jh6A00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.77 73.0 6.52e-01 100.0% 93.4%
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.76 71.0 6.30e-01 100.0% 96.3%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.72 67.0 6.23e-01 100.0% 97.6%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.72 66.0 5.98e-01 100.0% 96.7%
4qakA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.71 65.0 6.03e-01 100.0% 95.3%
4g1lA01 2.70.20.50 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain 0.60 50.0 4.70e-01 100.0% 74.8%
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.60 54.0 4.64e-01 97.8% 99.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.59 23.0 3.19e-01 94.9% 68.2%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 28.0 3.53e-01 90.4% 79.2%
2w4oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 24.0 3.09e-01 91.2% 66.2%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 25.0 3.27e-01 71.3% 73.7%
4gc8B00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.51 36.0 3.38e-01 73.5% 94.8%
1vluA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 38.0 3.11e-01 77.9% 89.6%
1s9iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 25.0 2.96e-01 97.1% 65.6%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.51 33.0 3.59e-01 77.2% 80.4%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 26.0 3.17e-01 99.3% 77.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1549209 264.1.1.2 ↗ beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A 0.85 81.0 7.91e-01 100.0% 93.8%
1736491 264.1.1.2 ↗ beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A 0.81 73.0 7.05e-01 94.1% 98.0%
1117634 264.1.1.8 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg 0.78 73.0 6.04e-01 100.0% 84.8%
1869530 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.78 73.0 6.23e-01 100.0% 92.4%
4026533 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.78 73.0 6.32e-01 100.0% 95.5%
3233020 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.78 72.0 6.40e-01 100.0% 96.8%
276 264.1.1.4 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.77 73.0 6.52e-01 100.0% 93.4%
3253597 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.77 71.0 6.26e-01 100.0% 97.4%
3531648 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.76 71.0 6.43e-01 100.0% 98.3%
4020982 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.76 70.0 5.60e-01 100.0% 75.0%
5039548 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.76 71.0 6.40e-01 100.0% 96.6%
3251551 264.1.1.15 ↗ beta barrels › LigT-like › LigT-related › LigT-related › DUF1045 0.76 70.0 5.96e-01 100.0% 94.0%
3338135 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.76 71.0 6.38e-01 100.0% 93.9%
3730050 264.1.1.5 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest 0.75 69.0 5.78e-01 100.0% 90.8%
4946449 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.75 69.0 6.19e-01 100.0% 96.2%
None — 0.75 69.0 6.25e-01 100.0% 97.2%
4453123 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.74 69.0 6.21e-01 100.0% 97.8%
5010662 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.74 68.0 6.12e-01 100.0% 95.1%
4972958 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.74 68.0 6.13e-01 100.0% 96.7%
3995136 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.73 54.0 5.23e-01 75.7% 96.0%
3690734 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.73 67.0 6.31e-01 100.0% 98.2%
4951894 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.73 68.0 5.98e-01 100.0% 86.7%
4937535 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.73 68.0 6.17e-01 100.0% 98.9%
4957217 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.72 67.0 6.08e-01 100.0% 96.7%
3270425 264.1.1.6 ↗ beta barrels › LigT-like › LigT-related › LigT-related › HVSL 0.72 67.0 5.91e-01 100.0% 97.4%
3990131 264.1.1.5 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest 0.72 66.0 5.70e-01 100.0% 93.3%
3982264 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.72 66.0 6.07e-01 100.0% 94.8%
5051264 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 66.0 6.01e-01 100.0% 96.6%
1953031 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 65.0 5.97e-01 100.0% 94.3%
5028063 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.70 65.0 5.93e-01 100.0% 95.4%
3495739 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.70 53.0 5.26e-01 80.1% 95.9%
4447743 264.1.1.6 ↗ beta barrels › LigT-like › LigT-related › LigT-related › HVSL 0.69 63.0 5.23e-01 100.0% 94.2%
3483252 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.69 51.0 5.05e-01 75.7% 95.0%
3179394 264.1.1.6 ↗ beta barrels › LigT-like › LigT-related › LigT-related › HVSL 0.68 62.0 5.16e-01 100.0% 96.7%
4991838 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.68 57.0 5.76e-01 89.0% 97.7%
4936677 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.58 46.0 4.87e-01 94.9% 95.8%
5040494 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 50.0 4.84e-01 94.9% 92.7%
3254948 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 37.0 3.23e-01 75.7% 90.7%
D3 medium residues 1-172
PDB
D4 medium residues 203-223_453-569
PDB
D5 medium residues 570-691
PDB