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VP4A

Euk-Vir

Nora_virus

VP4A__YP_004849311__Nora_virus__363716

Identity

Accession:
YP_004849311 ↗
Protein ID:
VP4A
Kingdom:
euk

Quality

66.8 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Noraviridae› Orthonoravirus› Drosophila_melanogaster_Nora_virus

TaxID: 363716

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-237
PDB
Domain cluster: rep: VP0__YP_009055025__Chicken_picornavirus_4__1534547__D26-282
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.75 62.0 5.68e-01 84.8% 87.1%
7dodB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 54.0 5.89e-01 74.8% 100.0%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.72 45.0 5.61e-01 97.8% 100.0%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 62.0 6.39e-01 92.2% 100.0%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 49.0 5.26e-01 97.8% 83.7%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 60.0 5.78e-01 92.6% 98.8%
5j98B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 61.0 5.83e-01 95.7% 91.2%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.66 39.0 4.76e-01 94.8% 90.3%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 47.0 5.46e-01 97.8% 100.0%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.66 40.0 5.09e-01 94.3% 100.0%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.65 42.0 5.07e-01 93.0% 97.4%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 5.89e-01 94.8% 97.7%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 49.0 5.01e-01 97.8% 81.1%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 48.0 5.44e-01 96.5% 100.0%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 45.0 5.23e-01 96.1% 100.0%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 49.0 5.37e-01 93.0% 100.0%
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 5.38e-01 92.2% 100.0%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.62 40.0 4.86e-01 82.6% 99.3%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 31.0 4.28e-01 89.6% 96.4%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.61 44.0 4.87e-01 93.0% 88.9%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.64e-01 99.1% 77.9%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 35.0 4.58e-01 94.3% 100.0%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 5.09e-01 99.1% 90.1%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 5.25e-01 98.7% 92.6%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 5.04e-01 99.1% 90.8%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 5.07e-01 97.8% 85.0%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 4.71e-01 97.4% 80.4%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 37.0 4.63e-01 90.9% 100.0%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 32.0 3.63e-01 87.4% 69.6%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 5.08e-01 97.8% 90.5%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 4.69e-01 97.0% 81.4%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 5.03e-01 99.1% 95.0%
1pgw200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.35e-01 95.2% 76.6%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.82e-01 97.8% 83.9%
4fy1100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 4.92e-01 89.1% 95.9%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 52.0 4.87e-01 100.0% 83.0%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.81e-01 98.7% 90.4%
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 51.0 4.75e-01 99.1% 89.1%
1a6cA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.13e-01 93.9% 71.8%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 51.0 4.86e-01 100.0% 90.4%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.82e-01 93.0% 96.9%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.74e-01 100.0% 90.8%
2g8gA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.53 47.0 3.60e-01 94.3% 92.7%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.41e-01 99.6% 78.8%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.53 47.0 3.65e-01 94.8% 92.4%
2y26A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.07e-01 93.5% 73.4%
1c8dA00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.53 47.0 3.53e-01 94.3% 93.8%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.74e-01 99.1% 89.8%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 35.0 4.15e-01 90.4% 95.1%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 35.0 4.13e-01 92.2% 97.4%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.55e-01 100.0% 88.0%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 35.0 4.22e-01 91.3% 100.0%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 49.0 4.74e-01 100.0% 91.2%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 37.0 4.12e-01 92.2% 92.2%
1g43A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.52 34.0 3.96e-01 89.6% 94.4%
3cjiA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 4.58e-01 98.3% 88.4%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 37.0 4.17e-01 77.4% 97.2%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 4.16e-01 95.7% 86.3%
3k4zA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 35.0 4.09e-01 89.6% 100.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888111 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.74 55.0 6.02e-01 75.7% 97.9%
1696117 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.72 52.0 5.74e-01 73.0% 98.9%
2100469 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.70 60.0 5.82e-01 89.1% 98.8%
1264422 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.70 62.0 6.41e-01 92.6% 100.0%
3075118 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.70 61.0 5.78e-01 90.0% 98.5%
3221888 10.32.1.218 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.69 36.0 4.74e-01 91.7% 91.9%
2044957 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.68 60.0 5.88e-01 92.6% 93.2%
1693517 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.68 49.0 5.23e-01 96.5% 83.5%
4872939 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.68 57.0 5.97e-01 87.8% 96.2%
3314257 10.32.1.193 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP 0.67 48.0 5.50e-01 90.9% 96.0%
3344591 10.2.1.81 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MP 0.67 49.0 5.15e-01 90.9% 82.0%
2793614 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.67 59.0 6.09e-01 94.3% 97.7%
2099173 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.66 60.0 5.66e-01 95.7% 95.9%
1214 10.2.1.38 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_N 0.66 47.0 5.37e-01 92.2% 96.0%
1219 10.2.1.24 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_LCP 0.64 48.0 5.31e-01 96.1% 95.2%
3270665 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.63 35.0 4.67e-01 75.7% 99.2%
1694889 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.63 48.0 5.06e-01 98.7% 85.8%
3277376 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 39.0 4.87e-01 93.5% 100.0%
297441 10.2.1.19 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Bromo_coat 0.63 42.0 4.82e-01 93.5% 92.1%
2440135 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.62 51.0 5.20e-01 97.8% 85.6%
296002 10.2.1.15 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.62 49.0 5.37e-01 92.2% 100.0%
1886797 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.61 51.0 4.92e-01 99.1% 77.9%
2862065 10.2.1.15 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.61 45.0 5.11e-01 83.5% 100.0%
143449 10.2.1.34 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat 0.61 46.0 5.10e-01 94.8% 99.4%
3805836 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 36.0 4.60e-01 87.8% 100.0%
185776 10.2.1.52 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › DUF4621 0.60 41.0 4.89e-01 90.9% 100.0%
140027 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.59 52.0 5.07e-01 97.8% 85.0%
2983138 10.2.1.88 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat 0.59 47.0 4.69e-01 97.4% 79.8%
2117349 10.2.1.10 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cucumo_coat 0.59 42.0 4.62e-01 92.6% 88.0%
4631095 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 36.0 4.41e-01 90.4% 93.3%
2982483 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.59 48.0 4.75e-01 97.4% 81.4%
337395 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.59 37.0 4.63e-01 90.9% 100.0%
1489398 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.58 47.0 4.62e-01 93.9% 77.7%
2982736 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.57 49.0 4.92e-01 97.8% 88.2%
4305531 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.57 38.0 4.58e-01 88.3% 100.0%
3932049 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 37.0 4.15e-01 88.7% 85.1%
4368632 10.32.1.266 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GldH_lipo 0.56 35.0 4.30e-01 92.6% 100.0%
1211 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.56 50.0 4.82e-01 97.8% 83.9%
2099184 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 53.0 4.77e-01 100.0% 86.7%
2099164 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.55 52.0 4.87e-01 100.0% 83.0%
4960572 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 38.0 4.49e-01 93.0% 98.2%
31099 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.55 48.0 4.81e-01 98.7% 90.4%
2048473 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.54 50.0 4.83e-01 97.8% 88.5%
1949031 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.54 51.0 4.86e-01 100.0% 90.4%
1945727 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.53 49.0 4.75e-01 99.1% 87.8%
2414126 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 46.0 4.59e-01 99.1% 88.4%
1697855 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.52 46.0 4.55e-01 100.0% 88.0%
1405131 10.2.1.51 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › HAV_VP 0.52 50.0 4.73e-01 100.0% 90.1%
2439648 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.52 48.0 4.54e-01 97.8% 84.6%
2389608 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.52 49.0 4.83e-01 100.0% 95.5%
3880028 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.52 45.0 4.50e-01 94.8% 89.8%
3886215 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 35.0 3.99e-01 99.1% 94.5%
4937335 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 35.0 4.01e-01 90.0% 93.5%