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VP4B

Euk-Vir

Callinectes_sapidus_reovirus_1

VP4B__YP_009480348__Callinectes_sapidus_reovirus_1__1811230

Identity

Accession:
YP_009480348 ↗
Protein ID:
VP4B
Kingdom:
euk

Quality

68.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 61-213
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 27.0 3.25e-01 95.4% 63.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 4.21e-01 96.7% 93.6%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.80e-01 94.8% 72.5%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 30.0 2.99e-01 94.8% 52.1%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.50 32.0 3.16e-01 99.3% 59.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1140833 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.66 28.0 4.07e-01 92.2% 84.9%
5014277 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 28.0 3.73e-01 98.7% 71.8%
4108772 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.62 28.0 3.92e-01 96.1% 86.7%
4228206 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 23.0 3.21e-01 91.5% 70.0%
3258590 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.59 24.0 2.98e-01 90.2% 60.0%
5009499 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.58 32.0 3.41e-01 96.1% 60.0%
5074323 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.56 25.0 2.91e-01 100.0% 54.8%
3479080 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 23.0 2.90e-01 94.8% 62.5%
4983588 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 22.0 3.15e-01 92.2% 80.0%
357364 9.10.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein bvu_3222 › Uncharacterized protein bvu_3222 › DUF4251 0.53 37.0 3.66e-01 94.8% 67.5%
4932380 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 24.0 3.33e-01 99.3% 87.8%
4132764 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 29.0 3.65e-01 99.3% 96.5%
3266335 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 26.0 3.29e-01 92.2% 81.1%
4992003 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.51 30.0 3.21e-01 96.7% 65.2%
4026006 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 27.0 3.50e-01 85.6% 95.0%
4949068 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.51 35.0 4.01e-01 97.4% 98.2%
4964630 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.50 31.0 3.22e-01 97.4% 64.3%
3327101 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.50 21.0 2.72e-01 92.2% 67.5%