VP4

Euk-Vir

American_grass_carp_reovirus

VP4__YP_001837099__American_grass_carp_reovirus__465447

Identity

71.5 mean pLDDT

View cluster (11 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-160

PDB

D2 high residues 288-475

PDB

Domain cluster: rep: VP5__YP_009351853__Fall_chinook_aquareovirus__1963254__D287-475

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05993.18 best	Reovirus_M2	360.8	1.70e-107	100.0%	29.1%

D3 medium residues 161-255

PDB

D4 medium residues 256-287_476-526

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05993.18 best	Reovirus_M2	80.3	1.30e-22	62.6%	8.0%
PF05993.18	Reovirus_M2	36.4	2.60e-09	39.8%	4.8%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4qnsA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.59	40.0	3.78e-01	97.6%	55.7%
3swhA01	1.10.357.50	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.53	40.0	3.22e-01	98.8%	40.6%
4ejoA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	31.0	2.83e-01	95.2%	42.0%
1f5oA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	43.0	3.56e-01	100.0%	52.3%
3ikmA02	3.30.420.390	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.50	43.0	3.14e-01	98.8%	91.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3484707	197.1.1.0 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like	0.62	30.0	2.71e-01	100.0%	30.0%
3414117	1075.1.1.4 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3	0.61	47.0	3.23e-01	83.1%	64.4%
3190457	7573.1.1.1 ↗	a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran	0.56	40.0	3.05e-01	100.0%	31.7%
3404279	109.4.1.528 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF	0.56	39.0	2.44e-01	100.0%	12.8%
3918313	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.55	44.0	2.79e-01	88.0%	68.0%
4978490	101.1.2.88 ↗	alpha arrays › HTH › HTH › winged helix domain › Dimerisation	0.52	34.0	3.22e-01	96.4%	53.3%

D5 medium residues 527-624

PDB