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VP4
Euk-VirRotavirus_F_chicken_03V0568_DEU_2003
VP4__YP_008145319__Rotavirus_F_chicken_03V0568_DEU_2003__994994
Identity
- Accession:
- YP_008145319 ↗
- Protein ID:
- VP4
- Kingdom:
- euk
Quality
55.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 78-211
D2
medium
residues 253-315
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17477.7 best | Rota_VP4_MID | 61.7 | 9.90e-17 | 100.0% | 26.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3256678 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 33.0 | 2.58e-01 | 100.0% | 26.2% |
| 3988269 | 3114.1.1.1 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP | 0.51 | 42.0 | 3.91e-01 | 100.0% | 74.1% |
D3
medium
residues 316-352_379-399_444-456
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17477.7 best | Rota_VP4_MID | 39.2 | 7.40e-10 | 56.3% | 13.5% |
D4
medium
residues 524-560_594-622
D5
medium
residues 623-738
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17478.8 best | VP4_helical | 116.0 | 3.40e-33 | 100.0% | 38.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 35.0 | 3.62e-01 | 87.9% | 69.9% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 27.0 | 3.04e-01 | 85.3% | 62.6% |
| 3wwvA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 26.0 | 3.38e-01 | 70.7% | 85.9% |
| 3ai4A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 38.0 | 2.95e-01 | 77.6% | 69.1% |
| 4ckbD02 | 3.20.100.20 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › | 0.51 | 38.0 | 3.17e-01 | 79.3% | 78.0% |
| 3k0xA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 31.0 | 3.34e-01 | 90.5% | 71.7% |
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 30.0 | 3.51e-01 | 94.0% | 89.2% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 29.0 | 3.39e-01 | 93.1% | 80.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983767 | 218.4.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain | 0.56 | 28.0 | 3.15e-01 | 70.7% | 61.1% |
| 3425697 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.55 | 47.0 | 4.01e-01 | 92.2% | 71.4% |