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VP4

Euk-Vir

Drosophila_subobscura_Nora_virus

VP4__YP_009047188__Drosophila_subobscura_Nora_virus__1500865

Identity

Accession:
YP_009047188 ↗
Protein ID:
VP4
Kingdom:
euk

Quality

64.4 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 314-472
PDB
Domain cluster: rep: VP4__YP_009047192__Drosophila_immigrans_Nora_virus__1500866__D325-384_438-515
D2 medium residues 1-88_106-126_222-235
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.53 31.0 3.73e-01 94.3% 89.9%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.51 31.0 3.66e-01 93.5% 89.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990557 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.51 28.0 2.37e-01 92.7% 31.0%
D3 medium residues 89-105_182-221
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4588326 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 3.86e-01 100.0% 54.1%
4019428 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.66e-01 98.2% 62.0%
D4 medium residues 127-181
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.79 70.0 4.61e-01 100.0% 39.4%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 63.0 4.21e-01 100.0% 27.8%
3napA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 61.0 3.92e-01 100.0% 31.4%
5b71E00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.60 50.0 4.33e-01 98.2% 91.4%
4hljA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.68e-01 90.9% 50.0%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 39.0 3.45e-01 72.7% 81.0%
5lf5A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.16e-01 100.0% 79.5%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.54 39.0 2.64e-01 80.0% 27.3%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.44e-01 85.5% 65.3%
1bmlC03 3.10.20.150 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 36.0 3.27e-01 72.7% 98.8%
2l8aA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.52 42.0 3.27e-01 100.0% 62.4%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 39.0 3.32e-01 87.3% 51.4%
2j42A02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.51 43.0 3.10e-01 100.0% 74.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5071646 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 4.46e-01 92.7% 65.9%
3644345 11.1.1.47 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.62 49.0 4.41e-01 90.9% 71.2%
4976078 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 4.45e-01 92.7% 70.7%
3782953 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.59 30.0 2.38e-01 87.3% 21.0%
3501392 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.58 47.0 3.97e-01 98.2% 76.2%
3431199 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 45.0 3.03e-01 89.1% 24.4%
3258832 10.32.1.73 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.57 46.0 3.47e-01 100.0% 34.7%
3675745 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.56 30.0 2.74e-01 100.0% 37.0%
3941056 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.44e-01 100.0% 56.2%
3573816 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 38.0 3.45e-01 85.5% 83.5%
4179218 825.1.1.0 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.51 40.0 2.77e-01 96.4% 59.1%
4199985 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 40.0 2.58e-01 92.7% 80.0%
D5 medium residues 554-669_721-803
PDB
Domain cluster: rep: VP0__YP_009055025__Chicken_picornavirus_4__1534547__D26-282
D6 medium residues 804-882
PDB
Domain cluster: rep: VP4__YP_009047192__Drosophila_immigrans_Nora_virus__1500866__D814-891