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VP4

Euk-Vir

Umatilla_virus

VP4__YP_009047262__Umatilla_virus__40060

Identity

Accession:
YP_009047262 ↗
Protein ID:
VP4
Kingdom:
euk

Quality

93.7 mean pLDDT

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-120
PDB
Domain cluster: rep: VP4__YP_008719907__Mobuck_virus__1408137__D7-110
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05059.21 best Orbi_VP4 112.9 1.70e-32 100.0% 17.5%
D2 medium residues 158-180_359-396
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05059.21 best Orbi_VP4 33.7 1.60e-08 88.5% 6.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3677933 109.4.1.1989 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TNPO3_IPO13_4th, TPR_TNPO3_IPO13_3rd 0.51 40.0 2.40e-01 88.5% 17.4%
D3 medium residues 181-358
PDB
Domain cluster: rep: polyA_polymerase_reg_subunit__YP_009001345__Pithovirus_sibericum__1450746__D33-211
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05059.21 best Orbi_VP4 237.2 4.10e-70 100.0% 27.9%
D4 medium residues 408-511
PDB
Domain cluster: rep: VP3__YP_008136241__Rotavirus_G_chicken_03V0567_DEU_2003__994995__D197-250_406-523
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05059.21 best Orbi_VP4 129.8 1.30e-37 99.0% 15.8%
D5 medium residues 512-648
PDB
Domain cluster: rep: VP4__YP_008719907__Mobuck_virus__1408137__D509-646
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05059.21 best Orbi_VP4 196.8 6.70e-58 94.2% 20.0%