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VP4
Euk-VirFall_chinook_aquareovirus
VP4__YP_009351852__Fall_chinook_aquareovirus__1963254
Identity
- Accession:
- YP_009351852 ↗
- Protein ID:
- VP4
- Kingdom:
- euk
Quality
72.3
mean pLDDT
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-66
D2
high
residues 75-175
Domain cluster:
rep: VP5__YP_001837098__American_grass_carp_reovirus__465447__D75-176
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07781.16 best | Reovirus_Mu2 | 65.7 | 4.20e-18 | 100.0% | 13.8% |
D3
high
residues 285-393
Domain cluster:
rep: VP4__YP_009507751__Scophthalmus_maximus_reovirus__994485__D285-391
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07781.16 best | Reovirus_Mu2 | 65.8 | 4.10e-18 | 100.0% | 13.6% |
D4
high
residues 428-583
Domain cluster:
rep: mu_A__YP_009246467__Mahlapitsi_orthoreovirus__2170064__D409-591
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07781.16 best | Reovirus_Mu2 | 137.3 | 9.50e-40 | 100.0% | 21.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lquA01 | 1.20.1420.40 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein | 0.54 | 39.0 | 3.96e-01 | 93.6% | 75.3% |
| 3axjB01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.53 | 37.0 | 3.74e-01 | 71.8% | 88.4% |
| 7shlA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.52 | 33.0 | 3.72e-01 | 85.9% | 81.1% |
| 1sxjC03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 27.0 | 3.26e-01 | 93.6% | 76.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4140649 | 140.1.1.4 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 | 0.55 | 31.0 | 3.27e-01 | 92.9% | 58.6% |
| 3809035 | 185.1.1.3 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Hydrophob_seed | 0.54 | 27.0 | 3.52e-01 | 84.0% | 88.7% |
| 5051102 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 31.0 | 3.25e-01 | 94.9% | 61.4% |
| 3687503 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.54 | 42.0 | 3.30e-01 | 80.8% | 80.9% |
| 5051683 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.51 | 33.0 | 3.72e-01 | 86.5% | 89.1% |
D5
high
residues 601-715
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07781.16 best | Reovirus_Mu2 | 52.9 | 3.10e-14 | 100.0% | 15.4% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.57 | 22.0 | 2.91e-01 | 98.3% | 60.7% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.54 | 48.0 | 4.69e-01 | 100.0% | 91.9% |