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VP4

Euk-Vir

Scophthalmus_maximus_reovirus

VP4__YP_009507751__Scophthalmus_maximus_reovirus__994485

Identity

Accession:: YP_009507751 ↗
Protein ID:: VP4
Kingdom:: euk

Quality

75.8 mean pLDDT

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 285-391

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07781.16 best	Reovirus_Mu2	62.4	4.30e-17	99.1%	13.8%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3icuA01	3.50.30.30	Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 ›	0.59	52.0	4.51e-01	97.2%	100.0%
3bnwB00	2.40.30.30	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like	0.58	37.0	3.27e-01	99.1%	42.7%
2p1gA02	2.30.260.10	Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain	0.58	36.0	3.75e-01	90.7%	67.0%
2kr7A01	3.10.50.40	Alpha Beta › Roll › Chitinase A; domain 3 ›	0.56	42.0	4.44e-01	100.0%	89.4%
4g1lA01	2.70.20.50	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain	0.55	48.0	4.23e-01	99.1%	73.6%
3hvnA01	3.90.840.10	Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain	0.54	37.0	3.16e-01	99.1%	43.6%
1h2cA00	2.70.20.20	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain	0.53	47.0	4.53e-01	100.0%	96.8%
1cv8A00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.52	37.0	3.14e-01	94.4%	44.5%
3jxvA01	3.10.50.40	Alpha Beta › Roll › Chitinase A; domain 3 ›	0.52	40.0	3.91e-01	96.3%	75.9%
4yhxA01	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.51	40.0	3.73e-01	86.0%	88.7%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3929121	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.72	39.0	3.80e-01	100.0%	48.7%
3715942	75.1.1.1 ↗	beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase	0.63	54.0	4.28e-01	94.4%	99.1%
4968208	75.1.1.1 ↗	beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase	0.62	55.0	4.33e-01	98.1%	96.4%
4856093	10.2.1.43 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C	0.60	38.0	3.67e-01	97.2%	56.3%
3928136	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.60	33.0	4.08e-01	88.8%	93.3%
3936663	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.58	41.0	3.96e-01	94.4%	64.0%
3406310	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	35.0	3.38e-01	95.3%	53.3%
3719783	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	40.0	4.26e-01	90.7%	83.0%
3239552	2487.1.1.0 ↗	a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain"	0.55	46.0	4.03e-01	91.6%	97.0%
3633294	219.1.1.93 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540	0.54	39.0	3.62e-01	99.1%	58.7%
3315951	220.1.1.86 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N	0.53	38.0	4.30e-01	94.4%	100.0%
7380	219.1.1.34 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47	0.52	37.0	3.14e-01	94.4%	44.5%
3907934	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	34.0	3.44e-01	95.3%	65.5%

D2 high residues 437-595

PDB

Domain cluster: rep: mu_A__YP_009246467__Mahlapitsi_orthoreovirus__2170064__D409-591

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07781.16 best	Reovirus_Mu2	149.4	2.10e-43	100.0%	21.7%

D3 high residues 596-715

PDB

Domain cluster: rep: VP4__YP_009351852__Fall_chinook_aquareovirus__1963254__D601-715

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07781.16 best	Reovirus_Mu2	58.0	8.90e-16	99.2%	15.5%

D4 medium residues 1-71_188-236

PDB

D5 medium residues 72-187

PDB

Domain cluster: rep: VP5__YP_001837098__American_grass_carp_reovirus__465447__D75-176

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07781.16 best	Reovirus_Mu2	63.3	2.30e-17	98.3%	14.9%