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VP5
Euk-VirMobuck_virus
VP5__YP_008719914__Mobuck_virus__1408137
Identity
- Accession:
- YP_008719914 ↗
- Protein ID:
- VP5
- Kingdom:
- euk
Quality
65.2
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Orbivirus›
Mobuck_virus
TaxID: 1408137
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 356-507
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00901.25 best | Orbi_VP5 | 227.6 | 3.70e-67 | 100.0% | 29.8% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c98B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.57 | 30.0 | 3.31e-01 | 94.1% | 59.7% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.54 | 32.0 | 3.45e-01 | 75.0% | 68.2% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 23.0 | 3.40e-01 | 70.4% | 96.8% |
| 7r8iA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 44.0 | 3.88e-01 | 90.8% | 96.8% |
| 3u4zA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 26.0 | 3.07e-01 | 97.4% | 68.8% |
| 3ebkB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 39.0 | 3.80e-01 | 96.1% | 73.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1721532 | 3733.1.1.1 ↗ | a+b complex topology › Orbivirus outer capsid protein VP5 › Orbivirus outer capsid protein VP5 › Orbivirus outer capsid protein VP5 › Orbi_VP5 | 0.89 | 85.0 | 5.61e-01 | 100.0% | 29.0% |
| 3217673 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 33.0 | 3.97e-01 | 98.0% | 68.6% |
| 3197091 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.65 | 45.0 | 4.91e-01 | 98.0% | 85.5% |
| 5020289 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.57 | 43.0 | 3.86e-01 | 78.3% | 97.1% |
| 3500684 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.56 | 26.0 | 3.42e-01 | 71.7% | 81.2% |
| 2491332 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 38.0 | 4.13e-01 | 71.1% | 98.4% |
| 3722127 | 9.2.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg | 0.55 | 40.0 | 3.61e-01 | 75.0% | 96.6% |
| 5003245 | 243.8.1.0 ↗ | a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein | 0.54 | 24.0 | 3.34e-01 | 79.6% | 85.7% |
| 3474038 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 37.0 | 3.91e-01 | 71.7% | 97.1% |
| 3698470 | 10.1.1.73 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26113 | 0.53 | 39.0 | 3.16e-01 | 77.0% | 71.1% |
| 3251443 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.53 | 38.0 | 4.16e-01 | 92.1% | 90.4% |
| 3328647 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.53 | 27.0 | 3.45e-01 | 100.0% | 85.9% |
| 3781750 | 9.2.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C | 0.52 | 38.0 | 3.40e-01 | 75.0% | 78.6% |
| 4638995 | 71.1.1.15 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 | 0.52 | 43.0 | 3.94e-01 | 87.5% | 95.4% |
| 4022865 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 44.0 | 3.80e-01 | 91.4% | 94.8% |
| 3954710 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.51 | 37.0 | 3.99e-01 | 97.4% | 90.4% |
| 3217505 | 9.1.1.55 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 | 0.50 | 35.0 | 3.96e-01 | 71.7% | 100.0% |
D2
medium
residues 269-355
Domain cluster:
rep: outer_capsid_protein_VP5__YP_009551624__Guangxi_orbivirus__2306813__D294-356
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00901.25 best | Orbi_VP5 | 67.5 | 1.30e-18 | 100.0% | 17.4% |