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VP5

Euk-Vir

Fall_chinook_aquareovirus

VP5__YP_009351853__Fall_chinook_aquareovirus__1963254

Identity

Accession:
YP_009351853 ↗
Protein ID:
VP5
Kingdom:
euk

Quality

75.0 mean pLDDT

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-151
PDB
Domain cluster: rep: VP5__YP_009507752__Scophthalmus_maximus_reovirus__994485__D39-157
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05993.18 best Reovirus_M2 83.7 1.30e-23 100.0% 16.1%
D2 high residues 287-475
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05993.18 best Reovirus_M2 227.0 5.30e-67 100.0% 29.2%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iylB03 2.60.120.420 Mainly Beta › Sandwich › Jelly Rolls › Membrane penetration protein mu1, Chain B, domain 4 0.96 93.0 8.63e-01 100.0% 83.6%
1jmuB04 2.60.120.420 Mainly Beta › Sandwich › Jelly Rolls › Membrane penetration protein mu1, Chain B, domain 4 0.87 84.0 8.12e-01 100.0% 92.8%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 48.0 5.20e-01 97.4% 98.1%
3ideA02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.60 44.0 4.90e-01 98.9% 100.0%
2vvdA00 2.60.120.720 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 4.99e-01 96.8% 98.1%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.58 42.0 4.75e-01 99.5% 100.0%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 42.0 4.74e-01 94.7% 100.0%
4zzfA02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 31.0 4.12e-01 87.3% 100.0%
1gff200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 4.84e-01 93.1% 91.0%
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 4.97e-01 94.2% 92.0%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 4.83e-01 95.2% 100.0%
3ul4A01 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 4.26e-01 91.0% 92.9%
3q13A01 2.60.40.2130 Mainly Beta › Sandwich › Immunoglobulin-like › F-spondin domain 0.55 39.0 3.92e-01 71.4% 91.6%
2ztbA03 2.60.40.3040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 16.0 2.86e-01 80.4% 87.5%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 4.55e-01 96.8% 100.0%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.63e-01 94.7% 98.1%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 48.0 4.93e-01 97.9% 100.0%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.54 28.0 3.66e-01 86.8% 93.8%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 39.0 4.35e-01 98.4% 96.6%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 27.0 3.49e-01 88.4% 86.5%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 4.07e-01 94.2% 91.1%
4ll1C02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 4.27e-01 94.2% 98.6%
2vngA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.52 44.0 4.66e-01 98.9% 100.0%
7k7jA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 4.62e-01 92.6% 100.0%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 28.0 3.61e-01 89.9% 96.0%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.84e-01 97.9% 92.7%
7ox5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 3.32e-01 87.8% 85.4%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 4.04e-01 91.0% 93.4%
5ftzA00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.50 42.0 4.38e-01 96.8% 97.1%
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 4.10e-01 96.8% 92.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1124176 10.16.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in membrane penetration protein mu1 › Jelly-roll domain in membrane penetration protein mu1 › Reovirus_M2 0.96 91.0 9.25e-01 97.4% 100.0%
2794422 10.16.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in membrane penetration protein mu1 › Jelly-roll domain in membrane penetration protein mu1 › Reovirus_M2 0.87 82.0 7.68e-01 97.9% 84.3%
3612035 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.65 39.0 4.85e-01 97.9% 100.0%
3264334 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.63 43.0 4.91e-01 99.5% 94.8%
3605104 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.60 42.0 4.75e-01 98.9% 94.3%
3703659 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.60 44.0 4.90e-01 98.9% 96.6%
3698953 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.60 42.0 4.73e-01 100.0% 94.3%
3898740 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.60 43.0 4.90e-01 96.8% 100.0%
3750200 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.59 45.0 4.96e-01 98.4% 97.3%
3724772 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 41.0 4.69e-01 99.5% 95.0%
3488907 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.59 45.0 4.84e-01 98.9% 93.8%
4669469 10.1.1.94 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF25849 0.59 49.0 4.44e-01 88.9% 99.2%
3744879 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 35.0 4.38e-01 95.2% 100.0%
2772578 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.58 42.0 4.83e-01 98.9% 100.0%
3272798 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 41.0 4.64e-01 97.9% 99.3%
3246669 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.58 39.0 4.47e-01 93.7% 91.4%
3692007 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 41.0 4.61e-01 99.5% 94.5%
3886325 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.58 43.0 4.58e-01 93.7% 88.5%
3893737 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.57 45.0 4.71e-01 99.5% 90.0%
5044435 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 47.0 5.02e-01 96.8% 100.0%
3537625 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.57 43.0 4.73e-01 94.7% 96.1%
3188970 10.1.1.73 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26113 0.57 51.0 4.40e-01 97.4% 100.0%
3853746 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.57 45.0 4.89e-01 97.4% 100.0%
4127135 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.57 42.0 4.63e-01 96.8% 94.2%
5083851 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 34.0 4.24e-01 97.9% 100.0%
3898208 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.55 42.0 4.59e-01 97.4% 96.8%
3703651 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 36.0 4.28e-01 100.0% 97.6%
2810269 10.2.1.48 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › DUF2961 0.54 45.0 4.45e-01 100.0% 81.9%
3997133 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 35.0 4.13e-01 96.3% 93.8%
3819083 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.54 49.0 4.44e-01 98.4% 95.6%
3458331 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 49.0 4.41e-01 100.0% 95.4%
2126901 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 48.0 4.50e-01 98.4% 82.5%
3215147 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.53 47.0 4.79e-01 94.2% 100.0%
3407300 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.53 46.0 4.78e-01 96.8% 99.4%
5051137 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 46.0 4.77e-01 94.2% 100.0%
3482386 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.53 44.0 4.66e-01 94.7% 100.0%
3902916 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.52 47.0 4.25e-01 97.9% 85.1%
3601261 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 4.09e-01 98.9% 79.5%
3922803 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 28.0 3.22e-01 94.7% 68.9%
3206484 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 35.0 4.07e-01 74.1% 100.0%
3233173 10.1.1.83 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.51 46.0 4.39e-01 96.3% 96.3%
4160951 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 46.0 4.30e-01 98.4% 91.1%
3626092 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 36.0 3.66e-01 70.4% 82.2%
4018219 11.1.1.203 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.51 29.0 3.67e-01 96.3% 97.1%
3906069 10.1.1.20 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C 0.51 45.0 4.27e-01 94.7% 96.9%
3923498 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.50 43.0 4.49e-01 91.5% 100.0%
3743629 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 33.0 3.85e-01 82.5% 93.3%
1096 10.1.1.25 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.50 44.0 4.09e-01 96.8% 91.9%