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VP5
Euk-VirScophthalmus_maximus_reovirus
VP5__YP_009507752__Scophthalmus_maximus_reovirus__994485
Identity
- Accession:
- YP_009507752 ↗
- Protein ID:
- VP5
- Kingdom:
- euk
Quality
61.8
mean pLDDT
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 287-485
Domain cluster:
rep: VP5__YP_009351853__Fall_chinook_aquareovirus__1963254__D287-475
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05993.18 best | Reovirus_M2 | 228.5 | 1.90e-67 | 100.0% | 30.8% |
D2
medium
residues 39-157
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05993.18 best | Reovirus_M2 | 79.0 | 3.20e-22 | 99.2% | 16.7% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jmuB01 | 3.90.1370.10 | Alpha Beta › Alpha-Beta Complex › Protein mu-1, chain B, domain 1 › Protein mu-1, chain B, domain 1 | 0.90 | 83.0 | 8.29e-01 | 96.6% | 97.5% |
| 2qsfA04 | 3.30.70.2460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Rad4, beta-hairpin domain BHD3 | 0.53 | 28.0 | 3.48e-01 | 88.2% | 85.7% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.51 | 29.0 | 3.56e-01 | 82.4% | 93.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2794423 | 4063.1.1.1 ↗ | a+b complex topology › a+b domain in membrane penetration protein mu1 › a+b domain in membrane penetration protein mu1 › a+b domain in membrane penetration protein mu1 › Reovirus_M2 | 0.89 | 82.0 | 6.33e-01 | 96.6% | 60.4% |
| 1281363 | 4063.1.1.0 ↗ | a+b complex topology › a+b domain in membrane penetration protein mu1 › a+b domain in membrane penetration protein mu1 › a+b domain in membrane penetration protein mu1 | 0.87 | 82.0 | 6.32e-01 | 100.0% | 49.0% |
| 4474711 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.53 | 30.0 | 3.18e-01 | 90.8% | 60.0% |
D3
medium
residues 158-224
D4
medium
residues 487-647