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VP6
Euk-VirAmerican_grass_carp_reovirus
VP6__YP_001837102__American_grass_carp_reovirus__465447
Identity
- Accession:
- YP_001837102 ↗
- Protein ID:
- VP6
- Kingdom:
- euk
Quality
85.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-132
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03084.20 best | Sigma_1_2 | 119.5 | 3.20e-34 | 97.6% | 29.2% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xb4B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 31.0 | 3.73e-01 | 73.0% | 100.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 158467 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.83 | 78.0 | 5.27e-01 | 100.0% | 31.2% |
| 168906 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.79 | 69.0 | 4.68e-01 | 100.0% | 28.3% |
D2
medium
residues 133-413
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03084.20 best | Sigma_1_2 | 287.6 | 3.20e-85 | 98.6% | 66.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.54 | 27.0 | 3.20e-01 | 89.0% | 65.6% |
| 2ogwA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 25.0 | 3.38e-01 | 70.1% | 85.8% |
| 3ceqA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 25.0 | 2.64e-01 | 85.8% | 47.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 387062 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.94 | 92.0 | 7.84e-01 | 100.0% | 68.2% |
| 158467 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.93 | 91.0 | 7.72e-01 | 99.6% | 67.6% |
| 168906 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.93 | 91.0 | 7.77e-01 | 100.0% | 68.8% |
| 3907213 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 21.0 | 3.58e-01 | 87.2% | 85.0% |
| 3560925 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.58 | 20.0 | 3.31e-01 | 87.9% | 80.9% |
| 4001527 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 29.0 | 3.96e-01 | 80.8% | 100.0% |