VP6

Euk-Vir

Rotavirus_D_chicken_05V0049_DEU_2005

VP6__YP_003896051__Rotavirus_D_chicken_05V0049_DEU_2005__884200

Identity

77.4 mean pLDDT

View cluster (5 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-152_330-398

PDB

D2 medium residues 153-229_278-294

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00980.22 best	Rota_Capsid_VP6	49.5	4.50e-13	93.6%	18.9%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1qhdA01	2.60.120.170	Mainly Beta › Sandwich › Jelly Rolls ›	0.96	87.0	6.89e-01	93.6%	79.4%
7xoiD01	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.57	46.0	4.44e-01	94.7%	78.5%
1qftB00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.56	33.0	2.75e-01	92.6%	33.1%
1dzkA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.55	37.0	3.16e-01	93.6%	43.2%
2imqX00	3.60.10.10	Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase	0.55	44.0	3.21e-01	89.4%	89.6%
3htyA00	2.40.128.280	Mainly Beta › Beta Barrel › Lipocalin ›	0.54	32.0	3.28e-01	92.6%	57.4%
3apuB00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.53	34.0	2.80e-01	92.6%	34.9%
2bzlA00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.51	40.0	2.87e-01	86.2%	67.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1263	10.5.1.3 ↗	beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Rota_Capsid_VP6	0.96	92.0	7.10e-01	100.0%	77.7%
3304346	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.56	28.0	3.29e-01	76.6%	67.1%
3749345	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.55	30.0	3.29e-01	77.7%	62.5%
3314422	330.1.1.1 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm	0.51	29.0	3.34e-01	75.5%	75.7%
3260045	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.50	34.0	3.81e-01	92.6%	89.3%

D3 medium residues 230-277_295-329

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1qhdA01	2.60.120.170	Mainly Beta › Sandwich › Jelly Rolls ›	0.87	82.0	6.30e-01	100.0%	58.2%
2cg7A01	2.10.70.10	Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1	0.51	25.0	3.17e-01	90.4%	82.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5039450	1143.1.1.1 ↗	beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C	0.55	30.0	3.16e-01	89.2%	54.7%