VP6

Euk-Vir

Rotavirus_G_chicken_03V0567_DEU_2003

VP6__YP_008136240__Rotavirus_G_chicken_03V0567_DEU_2003__994995

Identity

88.7 mean pLDDT

View cluster (4 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-149_333-389

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25657.2 best	Rota_VP6	259.5	6.70e-77	74.5%	38.0%
PF25657.2	Rota_VP6	76.1	3.60e-21	29.4%	14.9%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1qhdA02	1.10.1350.10	Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain	0.76	71.0	6.83e-01	100.0%	98.7%
3anwA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	28.0	3.71e-01	87.7%	82.3%
2kz6A01	6.10.140.1310	Special › Helix non-globular › Helix Hairpins ›	0.50	22.0	3.31e-01	82.8%	100.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1503850	617.1.1.2 ↗	alpha bundles › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › Rota_Capsid_VP6	0.76	53.0	6.14e-01	71.1%	100.0%
5049680	4163.1.1.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like	0.63	29.0	3.89e-01	91.7%	80.0%
3464786	3562.1.1.0 ↗	alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1	0.50	39.0	3.03e-01	80.9%	52.4%

D2 high residues 160-328

PDB

Domain cluster: rep: major_inner_capsid_protein__YP_392512__Rotavirus_C__36427__D161-330

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25657.2 best	Rota_VP6	237.0	4.90e-70	100.0%	42.8%