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VP7
Euk-VirAmerican_grass_carp_reovirus
VP7__YP_001837104__American_grass_carp_reovirus__465447
Identity
- Accession:
- YP_001837104 ↗
- Protein ID:
- VP7
- Kingdom:
- euk
Quality
65.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-99_213-261
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17071.11 best | Capsid_VP7 | 192.9 | 9.90e-57 | 67.6% | 35.0% |
| PF17071.11 | Capsid_VP7 | 79.4 | 3.80e-22 | 33.8% | 17.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fn9A01 | 3.90.1630.10 | Alpha Beta › Alpha-Beta Complex › Outer-capsid protein sigma 3, small lobe › Outer-capsid protein sigma 3, small lobe | 0.74 | 65.0 | 6.67e-01 | 98.6% | 99.3% |
| 2p5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 20.0 | 3.28e-01 | 94.6% | 80.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7595 | 856.1.1.1 ↗ | a+b complex topology › Outer capsid protein sigma 3-related › Outer capsid protein sigma 3-related › Outer capsid protein sigma 3-related › Reovirus_cap | 0.78 | 73.0 | 5.37e-01 | 100.0% | 92.6% |
| 85697 | 856.1.1.0 ↗ | a+b complex topology › Outer capsid protein sigma 3-related › Outer capsid protein sigma 3-related › Outer capsid protein sigma 3-related | 0.78 | 72.0 | 5.33e-01 | 100.0% | 93.4% |
| 119421 | 856.1.1.2 ↗ | a+b complex topology › Outer capsid protein sigma 3-related › Outer capsid protein sigma 3-related › Outer capsid protein sigma 3-related › Capsid_VP7 | 0.65 | 58.0 | 4.70e-01 | 95.9% | 86.6% |
D2
medium
residues 100-212_262-273