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VP7

Euk-Vir

Orbivirus_SX-2017a

VP7__YP_009345885__Orbivirus_SX-2017a__1955493

Identity

Accession:: YP_009345885 ↗
Protein ID:: VP7
Kingdom:: euk

Quality

92.5 mean pLDDT

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-252

PDB

Domain cluster: rep: OP172821.1__WAX17240.1__PM21P1_00018__00018__D96-201

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00897.25 best	Orbi_VP7	140.6	9.40e-41	100.0%	37.4%

D2 medium residues 1-119_304-320

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00897.25 best	Orbi_VP7	184.4	4.40e-54	89.7%	34.3%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1bvp101	1.10.250.10	Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1	0.98	84.0	9.00e-01	87.5%	100.0%
6tqpA01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.66	32.0	3.21e-01	99.3%	44.1%
2b1eA04	1.20.1280.170	Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70	0.62	37.0	3.81e-01	100.0%	62.2%
3ieeA02	1.20.58.820	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829	0.62	35.0	3.99e-01	100.0%	73.8%
4mk3A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.60	29.0	3.15e-01	100.0%	53.0%
3fayA00	1.10.506.10	Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1	0.54	36.0	2.62e-01	74.3%	24.0%
4pjjA04	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.54	38.0	4.01e-01	72.8%	87.2%
3n98A02	1.20.1430.10	Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain	0.52	36.0	3.67e-01	97.1%	70.9%
2q9rA01	1.20.1590.10	Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like	0.52	48.0	4.21e-01	100.0%	93.3%
4o6yB00	1.20.120.1770	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.52	48.0	4.09e-01	100.0%	77.3%
4iu9B02	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.51	42.0	3.67e-01	86.8%	91.6%
6srbA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	29.0	3.26e-01	100.0%	69.7%
2hpsA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.50	40.0	3.68e-01	86.8%	88.0%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4168	617.1.1.1 ↗	alpha bundles › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › Orbi_VP7	0.98	84.0	9.00e-01	87.5%	100.0%
57556	617.1.1.0 ↗	alpha bundles › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain	0.98	84.0	8.96e-01	87.5%	100.0%
3508720	5054.1.1.2 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans	0.63	45.0	3.55e-01	74.3%	91.4%
4165317	5059.1.1.9 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sugar_transport	0.57	49.0	3.89e-01	96.3%	85.4%
5052059	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.56	45.0	3.93e-01	86.0%	87.6%
4943557	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.56	32.0	3.34e-01	100.0%	58.5%
4018111	601.16.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase	0.56	40.0	3.67e-01	74.3%	80.6%
4945209	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.56	48.0	3.69e-01	94.1%	83.8%
3231497	5059.1.1.27 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › ChitinSynthase_IV_N	0.54	46.0	3.41e-01	94.1%	69.2%
5001048	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.54	43.0	3.85e-01	86.0%	92.8%
5031906	7014.1.1.2 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE	0.53	46.0	3.91e-01	99.3%	92.2%
3189342	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	42.0	3.60e-01	86.0%	92.4%
3179273	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.52	42.0	3.30e-01	86.8%	69.0%
3186203	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.52	45.0	3.50e-01	97.1%	83.9%
4123754	1002.1.1.1 ↗	alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB	0.52	29.0	2.97e-01	94.1%	55.4%
3182335	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.52	42.0	3.59e-01	86.8%	78.6%
4285855	1002.1.1.1 ↗	alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB	0.51	28.0	2.95e-01	94.1%	56.8%
4204244	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.51	42.0	3.75e-01	87.5%	89.5%
3198931	5059.1.1.3 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT	0.51	43.0	3.42e-01	94.1%	87.9%
3686864	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.50	40.0	3.29e-01	86.8%	83.3%
None	—		0.50	42.0	3.30e-01	93.4%	83.9%

D3 medium residues 255-303_321-349

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00897.25 best	Orbi_VP7	60.4	2.20e-16	65.4%	14.0%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1bvp103	1.10.170.10	Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3	0.98	95.0	8.67e-01	100.0%	99.0%
1qsaA02	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.59	36.0	3.76e-01	100.0%	67.1%