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VP7

Euk-Vir

Orungo_virus

VP7__YP_009507721__Orungo_virus__40058

Identity

Accession:
YP_009507721 ↗
Protein ID:
VP7
Kingdom:
euk

Quality

91.8 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Orbivirus› Orungo_virus

TaxID: 40058

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-120_258-349
PDB
Domain cluster: rep: VP7__YP_009345885__Orbivirus_SX-2017a__1955493__D1-119_304-320
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00897.25 best Orbi_VP7 193.4 8.10e-57 58.5% 34.9%
PF00897.25 Orbi_VP7 101.2 8.40e-29 43.9% 26.3%
D2 medium residues 121-172_191-213
PDB
Domain cluster: rep: VP7__YP_009507712__Lebombo_virus__40057__D124-170_240-255
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00897.25 best Orbi_VP7 33.7 2.90e-08 72.0% 14.9%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bvp102 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.96 92.0 7.31e-01 100.0% 69.2%
1ahsA00 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.96 86.0 6.96e-01 93.3% 69.0%
3anuA01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.51 35.0 2.91e-01 73.3% 94.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1260 10.5.1.2 ↗ beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Orbi_VP7 0.96 92.0 7.29e-01 100.0% 68.7%
D3 medium residues 173-190_214-252
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00897.25 best Orbi_VP7 32.7 5.90e-08 70.2% 11.1%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bvp102 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.93 89.0 6.48e-01 100.0% 59.4%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.64 55.0 4.20e-01 100.0% 67.9%
2orzA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 51.0 3.92e-01 100.0% 86.2%
3t30C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.62 52.0 4.52e-01 100.0% 85.3%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 50.0 3.80e-01 98.2% 89.2%
1zx5A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 51.0 4.56e-01 100.0% 71.1%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.59 44.0 4.63e-01 84.2% 98.0%
1y6kR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.11e-01 100.0% 68.0%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 46.0 3.94e-01 98.2% 77.4%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.00e-01 100.0% 59.2%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.71e-01 98.2% 66.4%
4dohB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.07e-01 100.0% 76.1%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.94e-01 100.0% 62.5%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.54 45.0 3.83e-01 100.0% 69.8%
1x5kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.88e-01 100.0% 74.3%
4wtxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.84e-01 98.2% 80.4%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.73e-01 98.2% 57.1%
1hnfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.99e-01 100.0% 70.9%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.70e-01 98.2% 78.4%
2ekjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.70e-01 100.0% 54.3%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 44.0 3.98e-01 98.2% 74.1%
3b83C00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.76e-01 100.0% 69.7%
4pbxA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.79e-01 100.0% 71.0%
3l5hA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.10e-01 100.0% 91.0%
3t1wA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 3.91e-01 100.0% 75.0%
4jdmA03 2.60.120.1340 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.30e-01 100.0% 41.6%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.89e-01 100.0% 76.4%
1x4yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.65e-01 96.5% 76.2%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.68e-01 98.2% 84.2%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 36.0 2.99e-01 75.4% 57.0%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.63e-01 100.0% 84.0%
4gpvA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.33e-01 100.0% 44.3%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.80e-01 100.0% 75.9%
2db8A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.48e-01 100.0% 65.5%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.51 41.0 3.52e-01 98.2% 80.0%
4jguA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.65e-01 98.2% 67.4%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.50 41.0 3.55e-01 94.7% 59.4%
1uunA01 2.60.40.1650 Mainly Beta › Sandwich › Immunoglobulin-like › Porin MspA (Ig-like beta-sandwich domain) 0.50 40.0 3.24e-01 96.5% 78.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606438 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.71 55.0 4.04e-01 86.0% 97.4%
4101142 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.69 54.0 5.23e-01 87.7% 93.8%
3275151 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.65 47.0 3.62e-01 80.7% 95.9%
3519566 10.32.1.230 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_N 0.64 54.0 4.21e-01 100.0% 98.5%
4405706 10.32.1.243 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29992 0.63 53.0 4.27e-01 98.2% 71.7%
4019429 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.37e-01 100.0% 63.5%
3539595 11.1.4.71 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_7th 0.59 48.0 4.45e-01 96.5% 70.7%
3927859 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 50.0 4.17e-01 100.0% 56.2%
3757469 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.20e-01 98.2% 69.4%
3797555 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.02e-01 98.2% 90.5%
3824983 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 45.0 3.60e-01 100.0% 47.4%
3261454 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 45.0 3.72e-01 98.2% 73.9%
4559514 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.21e-01 96.5% 81.4%
990538 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.03e-01 100.0% 73.3%
3893729 10.4.1.4 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › C5_CUB 0.54 45.0 3.80e-01 100.0% 84.5%
3878606 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 45.0 4.07e-01 100.0% 80.0%
3505727 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 45.0 4.12e-01 100.0% 95.0%
3916694 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 4.03e-01 100.0% 68.2%
3188287 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.54 42.0 3.33e-01 100.0% 37.9%
137321 11.1.1.610 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_DSCAM-DSCAML_C 0.54 43.0 3.78e-01 100.0% 71.6%
3586087 11.1.4.111 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › fn3 0.53 44.0 3.81e-01 100.0% 76.0%
3899364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.64e-01 98.2% 70.9%
3585762 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 44.0 2.60e-01 98.2% 13.5%
5062311 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.45e-01 98.2% 65.2%
3415506 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 44.0 3.62e-01 96.5% 68.2%
4956437 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.52 41.0 3.15e-01 86.0% 36.3%
5062813 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.52 44.0 3.85e-01 98.2% 73.3%
4981086 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.71e-01 98.2% 61.2%
3627148 11.1.1.954 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_3rd 0.52 43.0 3.80e-01 100.0% 74.7%
3624157 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.74e-01 100.0% 70.5%
3836149 11.1.1.863 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_VIN3 0.52 42.0 3.68e-01 100.0% 76.0%
3245161 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.72e-01 96.5% 95.3%
4964729 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.81e-01 100.0% 68.8%
3578826 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.57e-01 78.9% 80.0%
3990560 11.1.1.954 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_3rd 0.51 42.0 3.67e-01 100.0% 74.7%
3858825 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 41.0 3.63e-01 100.0% 74.7%
4391871 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 41.0 3.35e-01 98.2% 60.8%
2060725 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 38.0 3.53e-01 84.2% 68.0%