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VP80
Euk-VirPerigonia_lusca_single_nucleopolyhedrovirus
VP80__YP_009165693__Perigonia_lusca_single_nucleopolyhedrovirus__1675865
Identity
- Accession:
- YP_009165693 ↗
- Protein ID:
- VP80
- Kingdom:
- euk
Quality
60.6
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Perigonia_lusca_single_nucleopolyhedrovirus
TaxID: 1675865
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-153
Domain cluster:
rep: Vp80__YP_006607839__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D1-96
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02338.26 best | OTU | 42.1 | 1.60e-10 | 94.8% | 80.5% |
D2
high
residues 323-476
Domain cluster:
rep: vp80__YP_009186778__Sucra_jujuba_nucleopolyhedrovirus__1563660__D273-439
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.62 | 30.0 | 3.99e-01 | 80.5% | 87.2% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 34.0 | 4.33e-01 | 87.0% | 98.8% |
| 4pkwA02 | 1.10.2030.10 | Mainly Alpha › Orthogonal Bundle › Anthrax toxin lethal factor, domain 3, chain A › Anthrax toxin lethal factor, domain 3, chain A | 0.59 | 26.0 | 3.92e-01 | 99.4% | 100.0% |
| 3g87A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.59 | 28.0 | 3.87e-01 | 78.6% | 97.0% |
| 2qyxB01 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.59 | 29.0 | 3.37e-01 | 79.9% | 63.3% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 36.0 | 4.25e-01 | 99.4% | 91.1% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.59 | 36.0 | 4.19e-01 | 77.9% | 86.8% |
| 4hl9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 36.0 | 4.35e-01 | 100.0% | 98.9% |
| 4pcqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.57 | 30.0 | 3.77e-01 | 79.2% | 88.1% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 30.0 | 3.72e-01 | 78.6% | 84.4% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 30.0 | 3.94e-01 | 96.8% | 98.7% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 35.0 | 4.26e-01 | 100.0% | 99.0% |
| 2fiuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 34.0 | 4.22e-01 | 99.4% | 97.9% |
| 6c6uN00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.56 | 32.0 | 3.80e-01 | 78.6% | 84.7% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 30.0 | 3.81e-01 | 78.6% | 96.2% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 30.0 | 3.85e-01 | 100.0% | 95.1% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.56 | 29.0 | 3.84e-01 | 98.7% | 97.4% |
| 3lo3A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 33.0 | 4.09e-01 | 79.2% | 95.7% |
| 1x7vA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 34.0 | 4.07e-01 | 100.0% | 93.9% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 27.0 | 3.49e-01 | 97.4% | 82.9% |
| 4zosB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 34.0 | 4.07e-01 | 100.0% | 95.9% |
| 1m1hA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.55 | 30.0 | 3.59e-01 | 78.6% | 80.0% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 33.0 | 3.95e-01 | 81.2% | 92.8% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 31.0 | 3.06e-01 | 76.0% | 50.6% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 32.0 | 3.87e-01 | 79.2% | 90.8% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.80e-01 | 81.2% | 86.7% |
| 1q8kA03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.54 | 34.0 | 3.83e-01 | 100.0% | 83.6% |
| 3fgvA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 32.0 | 3.88e-01 | 100.0% | 97.8% |
| 3rrkA01 | 3.30.70.2170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 27.0 | 3.56e-01 | 77.3% | 100.0% |
| 4x0qA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.27e-01 | 96.8% | 63.6% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.87e-01 | 79.9% | 96.9% |
| 1vqyB01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 32.0 | 3.79e-01 | 98.7% | 98.9% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 26.0 | 3.42e-01 | 77.3% | 100.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943265 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.62 | 32.0 | 4.18e-01 | 77.3% | 93.7% |
| 2879783 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.61 | 31.0 | 4.17e-01 | 78.6% | 97.3% |
| 4946082 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.60 | 30.0 | 4.00e-01 | 78.6% | 94.7% |
| 5039525 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.58 | 34.0 | 4.19e-01 | 77.9% | 96.7% |
| 3493366 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 29.0 | 3.89e-01 | 76.6% | 100.0% |
| 4971032 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.57 | 29.0 | 3.69e-01 | 78.6% | 84.7% |
| 2832640 | 308.2.1.1 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain › PBP_dimer | 0.57 | 30.0 | 3.96e-01 | 78.6% | 100.0% |
| 3280191 | 304.4.1.7 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket | 0.57 | 36.0 | 4.20e-01 | 96.8% | 91.4% |
| 3738385 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.57 | 29.0 | 3.67e-01 | 77.3% | 84.7% |
| 4983809 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 31.0 | 4.00e-01 | 78.6% | 100.0% |
| 3288175 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.56 | 30.0 | 3.67e-01 | 80.5% | 82.1% |
| 4928084 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.56 | 34.0 | 4.07e-01 | 100.0% | 95.8% |
| 4340473 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.56 | 29.0 | 3.62e-01 | 77.3% | 84.7% |
| 4972516 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.55 | 29.0 | 3.79e-01 | 100.0% | 95.0% |
| 4441813 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.55 | 31.0 | 3.96e-01 | 77.9% | 97.6% |
| 3970630 | 304.4.1.57 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MFS_3 | 0.54 | 36.0 | 4.07e-01 | 86.4% | 91.8% |
| 3260874 | 304.4.1.15 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › NIPSNAP | 0.54 | 33.0 | 3.79e-01 | 100.0% | 84.5% |
| 4964910 | 300.1.1.25 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › TbsP_N | 0.53 | 31.0 | 3.22e-01 | 82.5% | 60.7% |
| 4983932 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 29.0 | 3.69e-01 | 78.6% | 98.8% |
| 4299576 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.52 | 28.0 | 3.52e-01 | 82.5% | 90.4% |
| 3377522 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.51 | 28.0 | 3.24e-01 | 74.0% | 72.4% |
| 4971209 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.51 | 30.0 | 3.52e-01 | 100.0% | 85.0% |
| 4008426 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.51 | 41.0 | 3.43e-01 | 83.8% | 55.4% |
| 3674181 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.51 | 28.0 | 3.28e-01 | 83.8% | 77.0% |
| 4961646 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.51 | 31.0 | 3.08e-01 | 83.8% | 55.8% |
| 4974557 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.51 | 38.0 | 3.95e-01 | 98.1% | 85.7% |
| 5026455 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.51 | 28.0 | 3.42e-01 | 97.4% | 85.3% |
D3
high
residues 677-862
Domain cluster:
rep: VP80_capsid,_VP87__YP_009666405__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D664-831
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07267.18 best | Nucleo_P87 | 102.5 | 3.90e-29 | 99.5% | 26.0% |