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VP8
Euk-VirOrbivirus_SX-2017a
VP8__YP_009345886__Orbivirus_SX-2017a__1955493
Identity
- Accession:
- YP_009345886 ↗
- Protein ID:
- VP8
- Kingdom:
- euk
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-124
Domain cluster:
rep: viral_inclusion_body_protein__YP_009158888__Wad_Medani_virus__40067__D17-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04514.20 best | BTV_NS2 | 178.1 | 5.20e-52 | 100.0% | 30.8% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zxrA01 | 2.40.50.460 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 30.0 | 2.72e-01 | 100.0% | 38.0% |
| 1fmbA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 35.0 | 3.66e-01 | 87.0% | 76.0% |
| 1yu9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 35.0 | 3.18e-01 | 71.3% | 98.2% |
| 6jmgB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 35.0 | 3.13e-01 | 71.3% | 97.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1058 | 703.1.1.1 ↗ | beta sandwiches › BTV NS2-like ssRNA-binding domain (N-terminal half of Pfam 04514) › BTV NS2-like ssRNA-binding domain (N-terminal half of Pfam 04514) › BTV NS2-like ssRNA-binding domain (N-terminal half of Pfam 04514) › BTV_NS2 | 0.97 | 95.0 | 8.38e-01 | 100.0% | 75.2% |
| 4095799 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 42.0 | 3.18e-01 | 75.7% | 74.9% |
| 4999643 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.55 | 40.0 | 3.88e-01 | 73.9% | 73.4% |
| None | — | 0.54 | 47.0 | 3.95e-01 | 95.7% | 94.0% | |
| 1005471 | 2.1.1.85 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB | 0.52 | 29.0 | 3.06e-01 | 100.0% | 56.1% |
| 5017464 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 28.0 | 2.97e-01 | 100.0% | 57.0% |
| 3232262 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.52 | 30.0 | 3.08e-01 | 84.3% | 58.2% |
| 3282850 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.51 | 39.0 | 3.77e-01 | 100.0% | 71.5% |
| 3406040 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 35.0 | 3.08e-01 | 71.3% | 90.8% |
| 5050858 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.50 | 34.0 | 2.98e-01 | 70.4% | 88.9% |
D2
high
residues 275-358
Domain cluster:
rep: single-stranded_RNA-binding_protein__YP_009551618__Guangxi_orbivirus__2306813__D349-434
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04514.20 best | BTV_NS2 | 80.4 | 2.60e-22 | 98.8% | 22.5% |