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VP91

Euk-Vir

Epinotia_aporema_granulovirus

VP91__YP_006908604__Epinotia_aporema_granulovirus__166056

Identity

Accession:
YP_006908604 ↗
Protein ID:
VP91
Kingdom:
euk

Quality

73.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Epinotia_aporema_granulovirus

TaxID: 166056

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-102
PDB
Domain cluster: rep: viral_capsid_associated_protein_91__YP_667935__Neodiprion_abietis_NPV__204507__D19-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08475.16 best Baculo_VP91_N 43.2 5.20e-11 100.0% 34.9%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.69 49.0 3.42e-01 73.6% 47.5%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.67 52.0 3.33e-01 83.3% 36.9%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.66 46.0 3.19e-01 72.2% 49.6%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.66 45.0 3.18e-01 72.2% 48.1%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.63 44.0 2.93e-01 75.0% 91.5%
4bfkA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.63 43.0 3.62e-01 70.8% 95.2%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 3.64e-01 79.2% 70.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 4.19e-01 72.2% 83.1%
1qy9A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 41.0 3.24e-01 73.6% 76.1%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 52.0 3.40e-01 98.6% 31.9%
4gakA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 43.0 2.98e-01 79.2% 38.4%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.30e-01 98.6% 35.5%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.59 48.0 3.98e-01 90.3% 70.5%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.58 51.0 4.09e-01 100.0% 52.7%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 51.0 3.31e-01 98.6% 28.5%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.17e-01 100.0% 36.8%
3zyyX04 3.30.420.480 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Domain of unknown function (DUF4445) 0.57 50.0 3.74e-01 100.0% 63.8%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 40.0 2.81e-01 76.4% 88.3%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 49.0 3.22e-01 100.0% 45.4%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 42.0 3.30e-01 80.6% 46.1%
3e38A02 2.60.40.3090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 3.75e-01 70.8% 98.7%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.95e-01 80.6% 87.4%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.56 38.0 3.49e-01 72.2% 82.5%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.55 40.0 3.19e-01 77.8% 68.9%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.55 39.0 4.04e-01 79.2% 89.7%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 41.0 3.34e-01 80.6% 92.5%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.79e-01 84.7% 87.1%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.67e-01 95.8% 64.8%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 36.0 3.15e-01 72.2% 92.4%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 47.0 3.55e-01 98.6% 53.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.78e-01 84.7% 69.0%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.52 45.0 3.91e-01 98.6% 69.9%
1ksiA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.69e-01 84.7% 86.5%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 41.0 2.96e-01 93.1% 36.5%
3kuvB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 43.0 3.64e-01 100.0% 94.7%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 37.0 3.68e-01 79.2% 73.4%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.51 37.0 3.49e-01 77.8% 73.3%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 2.93e-01 87.5% 63.7%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.58e-01 91.7% 91.3%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.50 42.0 2.89e-01 97.2% 76.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3300781 5.1.4.226 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.72 51.0 3.52e-01 75.0% 25.6%
4946341 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.67 42.0 2.90e-01 84.7% 18.8%
4029138 5.1.4.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.67 52.0 3.35e-01 83.3% 36.0%
3831169 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.65 47.0 3.23e-01 79.2% 65.8%
3252223 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 52.0 3.32e-01 88.9% 32.5%
3166679 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 47.0 2.96e-01 77.8% 32.4%
3721060 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 51.0 3.30e-01 88.9% 40.3%
4029623 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 56.0 3.32e-01 100.0% 20.2%
3496663 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 53.0 3.57e-01 94.4% 42.9%
5061559 5.1.4.235 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st 0.62 50.0 3.24e-01 88.9% 36.1%
3677142 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 47.0 3.11e-01 84.7% 47.3%
3467472 5.1.5.146 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.61 47.0 3.15e-01 84.7% 45.3%
3600347 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.60 47.0 4.11e-01 86.1% 80.0%
4934603 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 44.0 4.20e-01 77.8% 91.8%
3628642 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 54.0 3.40e-01 100.0% 25.5%
3588565 6048.1.1.1 ↗ a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.60 41.0 3.91e-01 72.2% 92.0%
4980820 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.60 49.0 3.67e-01 88.9% 78.3%
3937047 9.1.1.55 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 0.60 48.0 4.10e-01 88.9% 78.3%
3209159 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 52.0 3.27e-01 98.6% 23.7%
3392759 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 3.20e-01 94.4% 32.6%
3440597 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 45.0 4.15e-01 80.6% 93.3%
3490946 5.1.5.47 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BCAS3_WD40 0.59 47.0 2.95e-01 87.5% 19.2%
4993981 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.58 42.0 4.13e-01 77.8% 92.5%
3445096 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.58 50.0 3.17e-01 95.8% 26.0%
3940074 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 40.0 3.25e-01 70.8% 74.3%
3520126 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.58 51.0 3.28e-01 100.0% 28.9%
4957302 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 42.0 3.97e-01 77.8% 100.0%
3167073 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 43.0 3.37e-01 80.6% 81.9%
5016883 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 49.0 4.68e-01 93.1% 94.1%
None — 0.57 51.0 3.23e-01 100.0% 34.8%
3809935 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 52.0 3.23e-01 100.0% 30.4%
3473080 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.57 50.0 3.07e-01 98.6% 29.3%
4967383 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 46.0 3.41e-01 87.5% 77.4%
3438347 5.1.5.63 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.57 45.0 3.65e-01 87.5% 56.4%
3940325 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 50.0 3.41e-01 100.0% 51.6%
3903931 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.56 47.0 3.08e-01 93.1% 41.7%
3302013 5.1.5.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_At4g14310 0.56 49.0 3.06e-01 100.0% 36.0%
3214898 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.56 50.0 3.07e-01 98.6% 26.9%
3887951 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 35.0 3.07e-01 70.8% 39.1%
4981443 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.56 49.0 3.08e-01 98.6% 26.6%
4963562 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.56 50.0 3.20e-01 100.0% 24.5%
3793797 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.56 49.0 3.22e-01 100.0% 39.7%
4423214 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 35.0 3.17e-01 70.8% 42.9%
4934956 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.56 38.0 3.59e-01 70.8% 92.9%
3530957 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.56 48.0 3.03e-01 100.0% 24.0%
3742908 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.55 46.0 4.24e-01 93.1% 86.3%
4059727 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.55 46.0 3.60e-01 94.4% 73.9%
None — 0.55 48.0 3.21e-01 100.0% 39.7%
4973090 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.55 42.0 3.79e-01 81.9% 76.0%
5077042 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.55 39.0 3.61e-01 76.4% 94.7%
3648313 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.55 47.0 3.12e-01 100.0% 45.1%
4012738 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.54 44.0 3.53e-01 86.1% 48.9%
3437488 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.54 47.0 3.21e-01 100.0% 44.6%
4341158 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 39.0 3.13e-01 79.2% 81.0%
3198261 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.54 43.0 3.34e-01 94.4% 47.9%
1318715 243.16.1.1 ↗ a+b two layers › Cystatin-like › hypothetical protein CLOLEP_02462 › hypothetical protein CLOLEP_02462 › DUF6836 0.53 40.0 3.42e-01 79.2% 84.2%
4014180 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.53 40.0 3.29e-01 79.2% 46.7%
3600523 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 41.0 2.57e-01 83.3% 18.3%
3368968 331.3.1.25 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.52 39.0 2.66e-01 83.3% 84.3%
3644145 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 2.94e-01 100.0% 51.0%
4070998 601.18.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.51 35.0 2.56e-01 73.6% 27.4%
3378755 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 39.0 3.32e-01 84.7% 78.4%
5050840 212.1.1.60 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N 0.51 36.0 2.47e-01 73.6% 34.5%
4026653 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.50 42.0 3.75e-01 97.2% 70.0%
177347 7579.1.1.45 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_7 0.50 44.0 2.80e-01 100.0% 48.5%
D2 high residues 430-563
PDB
Domain cluster: rep: VP91_capsid__YP_003429409__Artogeia_rapae_granulovirus__362830__D505-641
D3 medium residues 182-234
PDB