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VPg

Euk-Vir

Caladenia_virus_A

VPg__YP_006666644__Caladenia_virus_A__1198147

Identity

Accession:
YP_006666644 ↗
Protein ID:
VPg
Kingdom:
euk

Quality

64.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-203
PDB
Domain cluster: rep: NIa-VPg__YP_010088104__Passiflora_edulis_symptomless_virus__2294149__D66-176
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.61 37.0 3.57e-01 91.3% 52.4%
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 36.0 4.04e-01 95.2% 76.5%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.58 25.0 3.79e-01 78.6% 100.0%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 37.0 3.80e-01 83.3% 65.6%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 4.43e-01 86.5% 96.0%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.54 32.0 4.01e-01 90.5% 98.7%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.73e-01 88.1% 78.9%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 4.25e-01 88.9% 87.4%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 4.11e-01 88.1% 75.3%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 4.35e-01 86.5% 92.1%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.52 37.0 4.21e-01 99.2% 100.0%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 36.0 2.88e-01 73.8% 96.8%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 34.0 3.58e-01 94.4% 75.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998603 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.57 34.0 4.22e-01 88.9% 97.3%
184884 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.57 27.0 3.69e-01 81.0% 90.0%
5049721 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 45.0 4.61e-01 88.9% 86.4%
4015499 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.56 46.0 3.76e-01 88.9% 81.1%
4976256 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 47.0 4.60e-01 88.9% 94.1%
3183643 243.9.1.4 ↗ a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › NuiA_2 0.55 34.0 3.54e-01 91.3% 65.5%
5076776 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 35.0 4.06e-01 88.9% 94.0%
5018578 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 46.0 4.60e-01 88.9% 94.6%
5079502 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 45.0 3.86e-01 88.9% 96.0%
3813186 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.84e-01 81.0% 36.0%
1146563 4312.1.1.1 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.54 32.0 4.04e-01 90.5% 100.0%
3781393 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 32.0 3.82e-01 79.4% 89.3%
3512723 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 44.0 3.69e-01 88.9% 77.7%
5047765 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 45.0 4.53e-01 88.9% 97.6%
4014132 243.9.1.0 ↗ a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related 0.53 35.0 3.54e-01 91.3% 66.4%
3252404 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.53 30.0 3.45e-01 88.1% 73.7%
5042925 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 43.0 4.09e-01 85.7% 94.5%
4944879 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 29.0 3.39e-01 88.1% 77.6%
3639554 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.52 43.0 3.63e-01 88.1% 73.5%
5014950 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.94e-01 88.1% 95.5%
5048521 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 32.0 3.67e-01 88.1% 89.4%
3995113 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.51 30.0 3.41e-01 87.3% 76.8%
5072371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 29.0 3.25e-01 92.9% 70.0%
3962288 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 30.0 3.02e-01 90.5% 56.2%
3509038 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 29.0 3.23e-01 87.3% 71.0%
4022207 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.50 43.0 3.27e-01 94.4% 52.6%