VPg

Euk-Vir

Platycodon_mild_mottle_virus

VPg__YP_010088115__Platycodon_mild_mottle_virus__2320870

Identity

87.4 mean pLDDT

View cluster (80 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-53

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5lp7E01	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.56	39.0	2.57e-01	73.3%	47.8%
1ra6A03	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.56	43.0	3.62e-01	91.1%	83.9%
4c97A02	3.30.70.1900	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	39.0	2.88e-01	88.9%	44.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3941240	384.1.1.1 ↗	few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI	0.55	41.0	3.52e-01	84.4%	86.1%
3644183	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.53	41.0	3.72e-01	100.0%	62.5%
3690939	7525.1.1.1 ↗	a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1	0.51	38.0	2.58e-01	88.9%	95.6%

D2 high residues 67-176

PDB

Domain cluster: rep: NIa-VPg__YP_010088104__Passiflora_edulis_symptomless_virus__2294149__D66-176