VPg_protein

Euk-Vir

Chinese_yam_necrotic_mosaic_virus

VPg_protein__YP_006590099__Chinese_yam_necrotic_mosaic_virus__128818

Identity

77.5 mean pLDDT

View cluster (5 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-56

PDB

D2 high residues 70-173

PDB

Domain cluster: rep: NIa-VPg__YP_010088104__Passiflora_edulis_symptomless_virus__2294149__D66-176

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r6fA03	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.70	40.0	4.76e-01	72.1%	81.9%
2m7oA00	3.10.450.400	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651	0.69	34.0	4.03e-01	100.0%	68.6%
2imjD01	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.59	37.0	3.37e-01	100.0%	46.5%
3er7B00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.56	36.0	3.42e-01	97.1%	55.3%
3kyeA00	3.30.450.30	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic	0.52	32.0	3.11e-01	78.8%	51.3%
1l7aA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.52	41.0	2.97e-01	86.5%	78.0%
1avgI00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.51	37.0	3.34e-01	100.0%	55.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5047765	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.55	50.0	4.73e-01	100.0%	92.0%
4028560	223.2.1.9 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N	0.55	37.0	3.34e-01	100.0%	49.0%
4962934	331.2.1.15 ↗	a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845	0.54	40.0	3.50e-01	77.9%	71.2%
4960006	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.53	48.0	4.77e-01	98.1%	95.4%
3614968	243.6.1.0 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain	0.52	37.0	3.70e-01	100.0%	71.4%
5048561	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.51	33.0	3.25e-01	98.1%	56.7%
3573748	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.50	45.0	3.43e-01	99.0%	56.3%
5053230	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.50	32.0	3.15e-01	98.1%	55.0%
3990451	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.50	46.0	3.22e-01	100.0%	39.4%