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V_protein

Euk-Vir

Tuhoko_virus_3

V_protein__YP_009094076__Tuhoko_virus_3__798074

Identity

Accession:
YP_009094076 ↗
Protein ID:
V_protein
Kingdom:
euk

Quality

60.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Pararubulavirus› Tuhoko_virus_3

TaxID: 798074

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 180-233
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13008.14 best zf-Paramyx-P 75.2 2.80e-21 83.3% 95.6%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.84 70.0 7.16e-01 90.7% 94.2%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.64 41.0 3.85e-01 98.1% 52.2%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 35.0 3.75e-01 94.4% 70.5%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 43.0 2.93e-01 100.0% 23.7%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 46.0 3.53e-01 100.0% 40.5%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 44.0 3.36e-01 98.1% 56.2%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.80e-01 96.3% 70.3%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.57e-01 100.0% 66.2%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.51 29.0 2.44e-01 74.1% 25.5%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 35.0 2.81e-01 74.1% 38.4%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.74e-01 100.0% 32.6%
1hfeL03 3.40.950.10 Alpha Beta › 3-Layer(aba) Sandwich › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 0.50 37.0 2.82e-01 98.1% 31.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4778874 3423.1.1.3 ↗ a+b three layers › Nonstructural protein V › Nonstructural protein V › Nonstructural protein V › zf-Paramyx-P 0.84 70.0 7.16e-01 90.7% 94.2%
3215682 101.1.1.7 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 0.71 37.0 2.72e-01 74.1% 20.0%
3817184 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.62 38.0 3.78e-01 88.9% 58.6%
3936316 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.59 45.0 4.57e-01 83.3% 85.5%
3352340 375.1.1.210 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF30904 0.58 33.0 3.33e-01 98.1% 52.7%
3651210 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 41.0 3.99e-01 100.0% 68.3%
3563464 3246.1.1.1 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.57 35.0 2.68e-01 100.0% 26.2%
3891450 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 40.0 2.95e-01 100.0% 26.9%
3618003 389.1.1.112 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29137 0.55 38.0 3.87e-01 88.9% 72.7%
4002619 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 34.0 2.92e-01 92.6% 40.0%
3787734 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 37.0 3.39e-01 85.2% 53.4%
3669809 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.53 36.0 2.79e-01 70.4% 60.8%
3890507 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.53 44.0 2.99e-01 100.0% 94.8%
5032539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 3.78e-01 100.0% 70.8%
4935553 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 35.0 2.59e-01 74.1% 54.4%
1070261 1.1.7.83 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C 0.51 29.0 2.63e-01 74.1% 32.1%
3559594 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.51 30.0 3.17e-01 79.6% 100.0%
1595160 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 2.52e-01 70.4% 46.7%
3962429 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.50 34.0 2.76e-01 74.1% 68.3%